CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006931_P002	Maize	plasma membrane	94.72	94.72
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	61.56	81.4
TraesCS2B01G171800.1	Wheat	mitochondrion	77.64	78.83
TraesCS2D01G151100.1	Wheat	mitochondrion	76.88	78.06
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	78.64	77.86
EER94809	Sorghum	mitochondrion	70.35	71.43
GSMUA_Achr5P27540_001	Banana	cytosol	48.99	67.24
KRH36835	Soybean	endoplasmic reticulum	60.05	62.08
KRH71696	Soybean	golgi	60.3	61.54
Solyc10g078400.1.1	Tomato	golgi	60.05	59.75
VIT_08s0040g01260.t01	Wine grape	golgi	58.04	58.04
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	57.04	57.47
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	57.54	57.25
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	57.04	56.89
PGSC0003DMT400021597	Potato	golgi	57.29	56.58
AT2G41150.2	Thale cress	endoplasmic reticulum, golgi	57.29	56.44
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	56.03	55.34
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	55.78	55.09
CDY65073	Canola	endoplasmic reticulum, golgi	55.53	54.84
Bra007268.1-P	Field mustard	golgi	55.53	54.84
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	55.03	54.34
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	55.28	54.19
Bra003250.1-P	Field mustard	golgi	45.23	43.17
GSMUA_Achr3P09270_001	Banana	plasma membrane	60.3	36.53
EER94138	Sorghum	mitochondrion	19.6	12.24
OQU89047	Sorghum	endoplasmic reticulum, golgi, vacuole	14.07	11.72
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	17.09	11.62

Protein Annotations

Gene3D:3.40.50.11350	MapMan:35.2	EntrezGene:8073086	UniProt:C5X3D3	EnsemblPlants:EER97624	ProteinID:EER97624
ProteinID:EER97624.1	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005975
GO:GO:0006004	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0016757	PFAM:PF10250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	EnsemblPlantsGene:SORBI_3002G392400	TMHMM:TMhelix
UniParc:UPI0001A83B48	RefSeq:XP_002461103.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:74511151..74514732

Molecular Weight (calculated)

45290.7 Da

IEP (calculated)

9.848

GRAVY (calculated)

-0.358

Length

398 amino acids

Sequence
(BLAST)

001: MAIQPRITGG RRQPLPLPLK RALLAAITVA AALSILCILS FTDTLSFTDT LSFLGFRPRD VDKRDGNRRY LYWGSRVDCP GKHCGSCAGL GHQESSLRCA
101: LEEALFLDRV LVMPAKMCLN SVHNTKGVLQ SSNATSQQRW ETGSCAMESL YDIDLISRTV PVILDNPRSW YEIISRSTKL GEDGLVVNVQ GVSRAELKQN
201: SNYSGALLIN RTASPLAWFM ECKDRTKRSS VMLPYTFLPT MATRKLREAA NKMKEILGDY DAIHVRRGDL LKNRKDRFGV ERSLHPHLDR DTRPEFIKKR
301: IAKWIRPGRT LFIASNERTP GFFSSLSDKY RLAYSSNFSS ILNLVIENNY QLFMVERLIM QGARTFVKTM KEFDKDLALC DDPKKNTKDW QEPVYTDD

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.