Factsheet for Bra007268.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
cytosol 1
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	99.26	98.52
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	89.58	89.58
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	75.93	77.47
Zm00001d010457_P001	Maize	cytosol	22.33	70.87
GSMUA_Achr5P27540_001	Banana	cytosol	48.64	67.59
KRH36835	Soybean	endoplasmic reticulum	64.02	67.01
Bra003250.1-P	Field mustard	golgi	68.73	66.43
KRH71696	Soybean	golgi	64.27	66.41
VIT_08s0040g01260.t01	Wine grape	golgi	62.78	63.57
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	47.39	63.46
PGSC0003DMT400021597	Potato	golgi	62.28	62.28
Solyc10g078400.1.1	Tomato	golgi	60.55	61.0
EER94809	Sorghum	mitochondrion	57.32	58.93
TraesCS2B01G171800.1	Wheat	mitochondrion	55.83	57.4
TraesCS2D01G151100.1	Wheat	mitochondrion	55.83	57.4
Os03t0366700-01	Rice	plastid	55.83	56.96
Zm00001d006931_P002	Maize	plasma membrane	55.58	56.28
EER97624	Sorghum	mitochondrion	54.84	55.53
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	55.34	55.47
Zm00001d029266_P002	Maize	mitochondrion	56.82	48.41
Zm00001d004819_P001	Maize	mitochondrion	29.78	42.11
Zm00001d022294_P002	Maize	plastid	15.88	38.1
Zm00001d016377_P001	Maize	nucleus	13.15	36.81
GSMUA_Achr3P09270_001	Banana	plasma membrane	59.31	36.38
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	19.85	14.39
Bra015145.1-P	Field mustard	mitochondrion	18.86	13.55

Protein Annotations

EnsemblPlants:Bra007268.1	EnsemblPlants:Bra007268.1-P	EnsemblPlantsGene:Bra007268	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	TMHMM:TMhelix
UniParc:UPI0002542C08	UniProt:M4CSS6	MapMan:35.2	:	:	:

Description

AT3G56750 (E=1e-218) | unknown protein

Coordinates

chrA09:-:28289438..28291033

Molecular Weight (calculated)

46198.8 Da

IEP (calculated)

9.331

GRAVY (calculated)

-0.385

Length

403 amino acids

Sequence
(BLAST)

001: MATMSKPQRT KPTSRSQRLV LLCIVIFASL LLLSSVISTG KLGLPYQQTL IDYFVRSSRG KREHTLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILD RSDNKTTEEG WVGSSCAMDS LYDIDLISEK VPVILDDSKT WHLVLSTSMK LEERGIAHVY GVSRHRLTES
201: HYSNLLIINR TASPLAWFVE CKDRGNRSAV MLPYSFLPNM AAANLRDAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILHRI
301: EKLIPPGRTL YIGSNERTPG FFSPLAVRYK LAYSSNFSEV LDPIIKNNYQ LFMVERLVMM GARTYFKTFR EYETDLTLTD DPKKNKNWEI PVYTMDERKE
401: AAS

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.