Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007268.1-P | Field mustard | golgi | 89.58 | 89.58 |
| CDY65073 | Canola | endoplasmic reticulum, golgi | 89.33 | 89.33 |
| CDY27198 | Canola | endoplasmic reticulum, golgi, mitochondrion | 89.33 | 88.67 |
| CDY51258 | Canola | endoplasmic reticulum, golgi, mitochondrion | 85.86 | 85.86 |
| CDX67655 | Canola | endoplasmic reticulum, golgi, mitochondrion | 85.36 | 85.36 |
| AT2G41150.2 | Thale cress | endoplasmic reticulum, golgi | 80.4 | 80.2 |
| Zm00001d010457_P001 | Maize | cytosol | 22.58 | 71.65 |
| KRH36835 | Soybean | endoplasmic reticulum | 64.52 | 67.53 |
| KRH71696 | Soybean | golgi | 65.26 | 67.44 |
| GSMUA_Achr5P27540_001 | Banana | cytosol | 48.39 | 67.24 |
| Bra003250.1-P | Field mustard | golgi | 67.99 | 65.71 |
| TraesCS2A01G146500.1 | Wheat | endoplasmic reticulum | 48.39 | 64.78 |
| VIT_08s0040g01260.t01 | Wine grape | golgi | 63.03 | 63.82 |
| PGSC0003DMT400021597 | Potato | golgi | 61.79 | 61.79 |
| Solyc10g078400.1.1 | Tomato | golgi | 61.04 | 61.5 |
| TraesCS2B01G171800.1 | Wheat | mitochondrion | 57.32 | 58.93 |
| TraesCS2D01G151100.1 | Wheat | mitochondrion | 57.32 | 58.93 |
| Os03t0366700-01 | Rice | plastid | 56.82 | 57.97 |
| EER94809 | Sorghum | mitochondrion | 56.33 | 57.91 |
| HORVU2Hr1G026040.3 | Barley | endoplasmic reticulum, golgi, mitochondrion, plastid | 57.07 | 57.21 |
| Zm00001d006931_P002 | Maize | plasma membrane | 55.83 | 56.53 |
| EER97624 | Sorghum | mitochondrion | 55.34 | 56.03 |
| Zm00001d029266_P002 | Maize | mitochondrion | 57.07 | 48.63 |
| Zm00001d004819_P001 | Maize | mitochondrion | 29.78 | 42.11 |
| Zm00001d022294_P002 | Maize | plastid | 16.38 | 39.29 |
| GSMUA_Achr3P09270_001 | Banana | plasma membrane | 60.05 | 36.83 |
| Zm00001d016377_P001 | Maize | nucleus | 12.16 | 34.03 |
| AT4G08810.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 19.6 | 14.31 |
| AT4G12700.1 | Thale cress | mitochondrion | 19.85 | 14.26 |
| AT2G04280.1 | Thale cress | mitochondrion | 18.61 | 13.2 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824842 | ProteinID:AEE79561.1 | ArrayExpress:AT3G56750 | EnsemblPlantsGene:AT3G56750 | RefSeq:AT3G56750 |
| TAIR:AT3G56750 | RefSeq:AT3G56750-TAIR-G | EnsemblPlants:AT3G56750.1 | TAIR:AT3G56750.1 | EMBL:AY059818 | EMBL:AY094482 |
| Unigene:At.26610 | EMBL:BT000051 | ProteinID:CAC00738.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 |
| GO:GO:0008150 | GO:GO:0016740 | GO:GO:0016757 | EMBL:KY906071 | RefSeq:NP_191234.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF8 | UniProt:Q9LET2 | TMHMM:TMhelix |
| UniParc:UPI00000AC70D | SEG:seg | : | : | : | : |
Description
AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
Coordinates
chr3:-:21018089..21020453
Molecular Weight (calculated)
46401.2 Da
IEP (calculated)
9.805
GRAVY (calculated)
-0.406
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.