Factsheet for Bra003250.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 2
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	75.3	77.92
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	73.62	76.18
Zm00001d010457_P001	Maize	cytosol	22.3	73.23
Bra007268.1-P	Field mustard	golgi	66.43	68.73
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	65.71	67.99
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	58.51	61.77
KRH36835	Soybean	endoplasmic reticulum	48.92	52.99
KRH71696	Soybean	golgi	49.16	52.56
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	37.17	51.49
GSMUA_Achr5P27540_001	Banana	cytosol	35.49	51.03
VIT_08s0040g01260.t01	Wine grape	golgi	47.72	50.0
Solyc10g078400.1.1	Tomato	golgi	46.52	48.5
TraesCS2D01G151100.1	Wheat	mitochondrion	45.32	48.21
TraesCS2B01G171800.1	Wheat	mitochondrion	45.32	48.21
PGSC0003DMT400021597	Potato	golgi	46.52	48.14
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	45.56	47.26
EER94809	Sorghum	mitochondrion	43.88	46.68
Os03t0366700-01	Rice	plastid	43.17	45.57
Zm00001d006931_P002	Maize	plasma membrane	43.41	45.48
EER97624	Sorghum	mitochondrion	43.17	45.23
Zm00001d004819_P001	Maize	mitochondrion	28.54	41.75
Zm00001d029266_P002	Maize	mitochondrion	43.65	38.48
Zm00001d016377_P001	Maize	nucleus	11.99	34.72
Zm00001d022294_P002	Maize	plastid	12.23	30.36
GSMUA_Achr3P09270_001	Banana	plasma membrane	47.48	30.14
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	16.55	12.41
Bra015145.1-P	Field mustard	mitochondrion	15.59	11.59

Protein Annotations

EnsemblPlants:Bra003250.1	EnsemblPlants:Bra003250.1-P	EnsemblPlantsGene:Bra003250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002541535	UniProt:M4CGB7	MapMan:35.2	:	:

Description

AT3G56750 (E=7e-097) | unknown protein

Coordinates

chrA07:-:12185402..12193419

Molecular Weight (calculated)

47467.8 Da

IEP (calculated)

10.016

GRAVY (calculated)

-0.304

Length

417 amino acids

Sequence
(BLAST)

001: MATMSKSQRI KPSPGSHRLV LLLTVFAFIL LLSSVISTGK LSLPYQQTLI DYFATSPRGK RQHTLSDKYL YWGNRIDCPG KNCETCAGLG HQESSLRCAL
101: EEALFLNRTF VMPSGMCINP THNKKGILDR SDDKATEEGF VECKDRGNRS NVMLPYSFLP NMAAPSLRNA AEKIKAQLGD YDAIHVRRGD KLKTRKDRFG
201: VERIQFPHLD RDTRPEFILR RIENKIPRGR TLFIGSNERT PGFFSPLAVR YKLAYSSNFS EILDPIIKNN YQLFMVERLV MMGAKTFFKT FKEYETDLTL
301: TDDPKKNKNW EIPVYTMEDE RKESLMNLAR ATLKRIVMVS LLRKLVPQSE YRKLLGAVVV IAANAGGAWT PIGDVSTTML WIHGLGVLWV LTDAIHYGES
401: ERQKLKIPQA LSFTSIE

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.