CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
mitochondrion 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	96.28	96.28
CDY65073	Canola	endoplasmic reticulum, golgi	86.85	86.85
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	86.85	86.21
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	85.86	85.86
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	74.19	74.75
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	72.95	73.68
Bra003250.1-P	Field mustard	golgi	76.18	73.62
Zm00001d010457_P001	Maize	cytosol	22.58	71.65
GSMUA_Achr5P27540_001	Banana	cytosol	48.14	66.9
KRH36835	Soybean	endoplasmic reticulum	63.28	66.23
KRH71696	Soybean	golgi	63.52	65.64
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	48.39	64.78
VIT_08s0040g01260.t01	Wine grape	golgi	62.78	63.57
PGSC0003DMT400021597	Potato	golgi	61.54	61.54
Solyc10g078400.1.1	Tomato	golgi	60.79	61.25
EER94809	Sorghum	mitochondrion	56.82	58.42
TraesCS2D01G151100.1	Wheat	mitochondrion	56.58	58.16
TraesCS2B01G171800.1	Wheat	mitochondrion	56.58	58.16
Os03t0366700-01	Rice	plastid	56.08	57.22
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	56.58	56.72
Zm00001d006931_P002	Maize	plasma membrane	55.58	56.28
EER97624	Sorghum	mitochondrion	55.09	55.78
Zm00001d029266_P002	Maize	mitochondrion	56.82	48.41
Zm00001d004819_P001	Maize	mitochondrion	29.53	41.75
Zm00001d022294_P002	Maize	plastid	16.38	39.29
GSMUA_Achr3P09270_001	Banana	plasma membrane	60.79	37.29
Zm00001d016377_P001	Maize	nucleus	13.15	36.81
CDY27873	Canola	mitochondrion	19.35	14.72
CDY00855	Canola	mitochondrion	19.6	13.98
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	19.11	13.97
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	19.11	13.82

Protein Annotations

EnsemblPlants:CDY51258	EnsemblPlantsGene:GSBRNA2T00003025001	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	ProteinID:CDY51258	ProteinID:CDY51258.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF163	UniProt:A0A078IQ69	MapMan:35.2	:

Description

BnaCnng20370DBnaCnng20370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ69]

Coordinates

chrLK032979:-:1765..3753

Molecular Weight (calculated)

46052.8 Da

IEP (calculated)

9.772

GRAVY (calculated)

-0.359

Length

403 amino acids

Sequence
(BLAST)

001: MATMSKSQRT KPSPGYRRLV LLLIVFAFIL LLSSVISTGK LGLPYQQTLI DYFATSPRGK RHHSLADKYL YWGSRIDCPG KNCETCAGLG HQESSLRCAL
101: EEALFLNRTF VMPSGMCINP IHNKKGILDR SDDKATEEGW VGSSCAMDSL YDIDLISEKI PVILDDSKTW HLVLSTSMKL GGRGIAHVYG VTRHRLTESH
201: YSNLLIINRT ASPLAWFVEC KDRGNRSSVM LPYSFLPNMA APSLRKAAEK IKAQLGDYDA IHVRRGDKLK TRKDRFGVER IQFPHLDRDT RPEFILRRIE
301: KKIPHGRTLF IGSNERTPGF FSPLAVRYKL AYSSNFSEVM DPIIKNNYQL FMVERLVMMG AKTFFKTFKE YETDLTLTDD PKKNKNWEIP VYTMEDERKE
401: SVS

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.