CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	97.02	96.31
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	89.33	89.33
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	87.1	87.1
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	86.85	86.85
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	76.18	76.75
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	75.93	76.69
Zm00001d010457_P001	Maize	cytosol	22.33	70.87
GSMUA_Achr5P27540_001	Banana	cytosol	48.39	67.24
KRH36835	Soybean	endoplasmic reticulum	64.02	67.01
KRH71696	Soybean	golgi	64.27	66.41
VIT_08s0040g01260.t01	Wine grape	golgi	62.78	63.57
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	46.9	62.79
PGSC0003DMT400021597	Potato	golgi	61.79	61.79
Solyc10g078400.1.1	Tomato	golgi	60.05	60.5
EER94809	Sorghum	mitochondrion	57.07	58.67
TraesCS2B01G171800.1	Wheat	mitochondrion	55.58	57.14
TraesCS2D01G151100.1	Wheat	mitochondrion	55.58	57.14
Os03t0366700-01	Rice	plastid	55.58	56.71
Zm00001d006931_P002	Maize	plasma membrane	55.58	56.28
EER97624	Sorghum	mitochondrion	54.84	55.53
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	55.34	55.47
Zm00001d029266_P002	Maize	mitochondrion	56.58	48.2
Zm00001d004819_P001	Maize	mitochondrion	29.78	42.11
Zm00001d022294_P002	Maize	plastid	16.13	38.69
GSMUA_Achr3P09270_001	Banana	plasma membrane	59.31	36.38
Zm00001d016377_P001	Maize	nucleus	12.66	35.42
CDY27873	Canola	mitochondrion	18.61	14.15
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	19.11	13.97
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	19.11	13.82
CDY00855	Canola	mitochondrion	18.86	13.45

Protein Annotations

EnsemblPlants:CDY65073	EnsemblPlantsGene:GSBRNA2T00044131001	PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	PFscan:PS51257	ProteinID:CDY65073
ProteinID:CDY65073.1	TMHMM:TMhelix	UniParc:UPI0004EC735E	UniProt:A0A078JBS2	MapMan:35.2	:

Description

BnaCnng45830DBnaCnng45830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBS2]

Coordinates

chrLK034649:+:18084..19680

Molecular Weight (calculated)

46252.0 Da

IEP (calculated)

9.448

GRAVY (calculated)

-0.356

Length

403 amino acids

Sequence
(BLAST)

001: MATMSKPQRT KPTSRSQRLV LLCIVIFACL LLLSSVISTG KLGLPYQQTL IDYFVRSPRG KREHTLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEALFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WVGSSCAMDS LYDIDLISEK IPVILDDSKT WHFVLSTSMK LEERGIAHVY GVSRHRLTQS
201: HYSNLLIINR TASPLAWFVE CKDRGNRSAV MLPYSFLPNM AAVNLRDAAE KIKAELGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRA TRPEFILHRI
301: EKLIPPGRTL YIGSNERTPG FFSPLAVRYK LAYSSNFSEI LDPIIKNNYQ LFMVERLVMM GARTYFKTFR EYETDLTLTD DPKKNKNWEI PVYTMDERKE
401: AAS

Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)

001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS

Arabidopsis Description

AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.