Factsheet for Solyc10g078400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 4
golgi 4
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	golgi, nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021597	Potato	golgi	83.0	82.38
Zm00001d010457_P001	Maize	cytosol	23.75	74.8
GSMUA_Achr5P27540_001	Banana	cytosol	51.25	70.69
KRH36835	Soybean	endoplasmic reticulum	67.5	70.13
VIT_08s0040g01260.t01	Wine grape	golgi	69.5	69.85
KRH71696	Soybean	golgi	67.75	69.49
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	49.25	65.45
EER94809	Sorghum	mitochondrion	62.0	63.27
Os03t0366700-01	Rice	plastid	60.5	61.27
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	61.5	61.04
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	60.25	61.01
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	61.0	61.0
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	61.25	60.79
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	61.25	60.79
Bra007268.1-P	Field mustard	golgi	61.0	60.55
TraesCS2B01G171800.1	Wheat	mitochondrion	59.25	60.46
EER97624	Sorghum	mitochondrion	59.75	60.05
CDY65073	Canola	endoplasmic reticulum, golgi	60.5	60.05
AT2G41150.2	Thale cress	endoplasmic reticulum, golgi	60.5	59.9
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	59.75	59.9
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	60.75	59.85
TraesCS2D01G151100.1	Wheat	mitochondrion	58.5	59.69
Zm00001d006931_P002	Maize	plasma membrane	58.25	58.54
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	58.75	58.46
Zm00001d029266_P002	Maize	mitochondrion	61.5	52.01
Bra003250.1-P	Field mustard	golgi	48.5	46.52
Zm00001d022294_P002	Maize	plastid	19.0	45.24
Zm00001d004819_P001	Maize	mitochondrion	31.75	44.56
GSMUA_Achr3P09270_001	Banana	plasma membrane	62.5	38.05
Zm00001d016377_P001	Maize	nucleus	12.75	35.42
Solyc12g006200.1.1	Tomato	golgi, mitochondrion, nucleus, plasma membrane	18.25	12.65
Solyc07g045210.1.1	Tomato	golgi, mitochondrion	18.0	12.37
Solyc01g005690.2.1	Tomato	plastid	8.0	7.22

Protein Annotations

EnsemblPlants:Solyc10g078400.1.1	EnsemblPlantsGene:Solyc10g078400.1	Gene3D:3.40.50.11350	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31469	PANTHER:PTHR31469:SF8	TMHMM:TMhelix	UniParc:UPI000276A244	UniProt:K4D282	MapMan:35.2

Description

No Description!

Coordinates

chr10:+:60227882..60232609

Molecular Weight (calculated)

45421.7 Da

IEP (calculated)

9.253

GRAVY (calculated)

-0.357

Length

400 amino acids

Sequence
(BLAST)

001: MAIQKTHKGK TKPRSPTLIL TVSIVAITLL YIVSTLFSPN GFSFSTSITS KNSVFSKNRR QHNGPHKYLY WGNRIDCPGK HCDTCAGLGH QESSLRCALE
101: EAMFLRRTFV MPSKMCINPI HNNKGILHSS SNSISEERWA DSSCAMDSLY DLDLISVTVP VILDNSEMWH HVLATSMKLG SRGVAHVEGV SRADLKEKSS
201: YSNILLINRT ASPLSWFAEC KDRKNHSSIL LPYSFLPSMA AEKLRYAAEE IKKLLGDYDA MHVRRGDVLK TRKDRFGVER SLHPHLDRDT RAEFILCRIA
301: KWVPPGRTLF IASNERTPGY FSPLAVRYKL AYSSNYSSIL DPLIENNYEL FMVERLILMG AKTFIKTMKE DDNDLSLSDD PKKNTKKWEI PVYTRDGEEC

Best Arabidopsis Sequence Match ( AT2G41150.2 )
(BLAST)

001: MATMSKPHKL KATPGSQRLV LLCIVAVAFL LLFTSVISTG GLALPYRTTL IGYFVRSTRN KTQHSLSDKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSRMCIN PIHNKKGILN RSNNETREES WEVSSCAMES LYDIDLISEK IPVILDDSET WHIMLSTSMK LKERGSAHVY GANRHELNDS
201: SDFTNLLLIN RTASPLAWFV ECKDRGNRSD VMLPYSFLQT MAASRLRDAA EKIKAKLGDY DAIHVRRGDK LKTRKDRFRV ERSQFPHLDR DTRPEFIIGR
301: IQKQIPPGRT LFIGSNERTP DFFSPLAIRY KVAYSSNFSE ILDPIIENNY QLFMVERLIM MGAKTFFKTF REYETDLTLT DDPKKNKNWE IPVYTMDEGK
401: EAAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 57 Blast hit /.../7 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). [Source:TAIR;Acc:AT2G41150]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.