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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • golgi 4
  • nucleus 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:golgi
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:golgi
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH71696 Soybean golgi 94.81 93.59
VIT_08s0040g01260.t01 Wine grape golgi 77.4 74.87
GSMUA_Achr5P27540_001 Banana cytosol 56.1 74.48
Zm00001d010457_P001 Maize cytosol 24.42 74.02
PGSC0003DMT400021597 Potato golgi 70.91 67.74
Solyc10g078400.1.1 Tomato golgi 70.13 67.5
TraesCS2A01G146500.1 Wheat endoplasmic reticulum 52.47 67.11
AT3G56750.1 Thale cress endoplasmic reticulum, golgi, plastid 67.53 64.52
Bra004601.1-P Field mustard endoplasmic reticulum, golgi, mitochondrion 65.71 64.05
CDY65073 Canola endoplasmic reticulum, golgi 67.01 64.02
Bra007268.1-P Field mustard golgi 67.01 64.02
CDY51258 Canola endoplasmic reticulum, golgi, mitochondrion 66.23 63.28
CDY27198 Canola endoplasmic reticulum, golgi, mitochondrion 66.49 63.05
CDX67655 Canola endoplasmic reticulum, golgi, mitochondrion 65.97 63.03
CDX79955 Canola endoplasmic reticulum, golgi, mitochondrion 65.45 63.0
CDY23872 Canola endoplasmic reticulum, golgi, mitochondrion 65.19 62.91
AT2G41150.2 Thale cress endoplasmic reticulum, golgi 65.45 62.38
Os03t0366700-01 Rice plastid 63.38 61.77
EER94809 Sorghum mitochondrion 62.86 61.73
TraesCS2B01G171800.1 Wheat mitochondrion 62.34 61.22
TraesCS2D01G151100.1 Wheat mitochondrion 62.08 60.97
Zm00001d006931_P002 Maize plasma membrane 62.08 60.05
EER97624 Sorghum mitochondrion 62.08 60.05
HORVU2Hr1G026040.3 Barley endoplasmic reticulum, golgi, mitochondrion, plastid 62.08 59.45
Zm00001d029266_P002 Maize mitochondrion 62.6 50.95
Bra003250.1-P Field mustard golgi 52.99 48.92
Zm00001d022294_P002 Maize plastid 19.74 45.24
Zm00001d004819_P001 Maize mitochondrion 32.73 44.21
GSMUA_Achr3P09270_001 Banana plasma membrane 66.49 38.97
Zm00001d016377_P001 Maize nucleus 13.51 36.11
KRH16980 Soybean mitochondrion 19.22 13.01
KRH72615 Soybean mitochondrion 18.96 12.83
KRH42826 Soybean nucleus 18.96 12.7
KRH58921 Soybean endoplasmic reticulum 18.44 12.39
Protein Annotations
EntrezGene:100796131Gene3D:3.40.50.11350MapMan:35.2UniProt:A0A0R4J415EMBL:ACUP02005398InterPro:GDP-Fuc_O-FucTrfase
EnsemblPlantsGene:GLYMA_09G026700GO:GO:0003674GO:GO:0003824GO:GO:0005975GO:GO:0006004GO:GO:0008150
GO:GO:0008152GO:GO:0016740GO:GO:0016757EnsemblPlants:KRH36835ProteinID:KRH36835ProteinID:KRH36835.1
PFAM:PF10250PANTHER:PTHR31469PANTHER:PTHR31469:SF8TMHMM:TMhelixUniParc:UPI0001B63EB6SEG:seg
Description
hypothetical protein
Coordinates
chr9:+:2167950..2176941
Molecular Weight (calculated)
43533.7 Da
IEP (calculated)
9.302
GRAVY (calculated)
-0.230
Length
385 amino acids
Sequence
(BLAST)
001: MAFHRASKAK PKSARSRILL LAAAVTAIAL LLLFSSLLST TVSKANLLQQ PFEKYLYWGT RIDCPGKHCR SCEGLGHQES SLRCALEEAL FLGRTFVMPS
101: GMCINPIHNK KGILHSTNAS SEELWDASSC AMDSLYDTEL MSDTVPVILD NSKEWYRVLS TSMKLGARGV AHVGGVSRFE LKENSRYSDL LLINRTASPL
201: SWFMECKDRN NGSAIMLPYS FLPSMAAGKL RDAAEKIKAL LGDYDAIHVR RGDKIKTRKD RFGVVRSLHP HLDRDTRPEF MLCRIAKWVP PGRTLFIASN
301: ERTPGFFSPL SARYRLAYSS NYSHILDPLI ENNYQLFMIE RLIMMGAKTF IRTFKEDETD LSLTDDPKKN TKLWQIPVYN VDETC
Best Arabidopsis Sequence Match ( AT3G56750.1 )
(BLAST)
001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS
Arabidopsis Description
AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.