CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 2
nucleus 2
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58921	Soybean	endoplasmic reticulum	88.35	88.66
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	69.74	71.86
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	67.83	70.65
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	67.48	70.42
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	68.0	70.32
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	67.48	70.16
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	67.83	70.02
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	43.83	65.12
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	60.7	61.99
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	60.87	59.83
Zm00001d022247_P001	Maize	plasma membrane	58.26	57.66
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	58.43	57.44
Os07t0633600-01	Rice	golgi	58.09	57.09
Solyc01g005690.2.1	Tomato	plastid	43.65	56.66
TraesCS2A01G154600.1	Wheat	unclear	56.7	56.01
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	56.87	55.71
KRH16980	Soybean	mitochondrion	46.26	46.75
KRH72615	Soybean	mitochondrion	46.26	46.75
KRH71696	Soybean	golgi	13.22	19.49
KRH36835	Soybean	endoplasmic reticulum	12.7	18.96

Protein Annotations

EntrezGene:100801063	MapMan:35.2	EMBL:ACUP02004832	InterPro:GDP-Fuc_O-FucTrfase	EnsemblPlantsGene:GLYMA_08G114200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	UniProt:I1KSC1	EnsemblPlants:KRH42826
ProteinID:KRH42826	ProteinID:KRH42826.1	PFAM:PF10250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	TMHMM:TMhelix
UniParc:UPI0002338F65	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:8742410..8744749

Molecular Weight (calculated)

66507.3 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.636

Length

575 amino acids

Sequence
(BLAST)

001: MKDSNSSSSS NRTEPIAQNI IKLISNLCFS LFVFSVLIFT VIAITYQPPD PWLQSTPALT NLFTQSENAT FRIDSSVLRT GEDLSPSPQD PPLPPPPPSE
101: PLIDITQQQI ANSTVNSTAD STAYSTDAQP PSLPACDETL NCSNPRVLIA VQRFNLRAFK SIAFFDYQPP MNGSVPGECD VAWRFRNKRE RSWRKYRDFR
201: RFKIAVTDDC RYKVVHAGGW HSGANARRNV TRTGAGRGGK SLPPRASARD DEINDTIPTL GSDTNFRNGK YLYYSRGGDY CKGMNHYLWS FLCGLGEAMF
301: LNRTFVMDLS VCLASTYNPS NKDEEGKDFR YYFDFEHLKE TASIVEEGEF LRDWKKWDKT HLKKKKVPVR KVVNHKVTPM QLKKDKSTII WRQFDAPEPE
401: NYWYRVCEGE AAQYVQRPWH AVWKSKRLMN IVTEISGRLD WDFDAVHVVR GEKAQNKELW PHLDYDTSPD VLVEKLKWMV QPWRHLYIAT NEPYYNYFDK
501: LRSNYKVHLL DDYKELWGNT SEWYNETTLL NSGKPVEFDG YMRVAVDTEV FYRGKTRVET FYNLTKDCKD GVNTC

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.