Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- endoplasmic reticulum 2
- golgi 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022247_P001 | Maize | plasma membrane | 88.89 | 89.5 |
| HORVU2Hr1G028070.1 | Barley | endoplasmic reticulum, plastid | 55.21 | 83.46 |
| Os07t0633600-01 | Rice | golgi | 82.39 | 82.39 |
| TraesCS2A01G154600.1 | Wheat | unclear | 80.85 | 81.27 |
| TraesCS2B01G179800.1 | Wheat | endoplasmic reticulum, plastid | 81.03 | 80.75 |
| GSMUA_Achr4P00760_001 | Banana | golgi, plasma membrane | 60.85 | 63.23 |
| GSMUA_Achr6P01490_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 61.37 | 61.37 |
| PGSC0003DMT400082037 | Potato | endoplasmic reticulum, plasma membrane | 56.58 | 59.86 |
| VIT_06s0004g00600.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 56.92 | 59.68 |
| KRH58921 | Soybean | endoplasmic reticulum | 57.61 | 58.81 |
| CDX90695 | Canola | endoplasmic reticulum, golgi, plastid | 55.21 | 58.62 |
| KRH42826 | Soybean | nucleus | 57.44 | 58.43 |
| AT4G08810.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 55.04 | 58.33 |
| Bra000656.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 55.38 | 58.27 |
| CDY05025 | Canola | endoplasmic reticulum, golgi, plastid | 55.21 | 57.99 |
| Solyc01g005690.2.1 | Tomato | plastid | 36.41 | 48.08 |
| EER94138 | Sorghum | mitochondrion | 43.08 | 39.56 |
| OQU89047 | Sorghum | endoplasmic reticulum, golgi, vacuole | 25.81 | 31.59 |
| EER94809 | Sorghum | mitochondrion | 12.48 | 18.62 |
| EER97624 | Sorghum | mitochondrion | 11.62 | 17.09 |
Protein Annotations
| MapMan:35.2 | EntrezGene:8063523 | UniProt:C5X390 | EnsemblPlants:EER99762 | ProteinID:EER99762 | ProteinID:EER99762.1 |
| InterPro:GDP-Fuc_O-FucTrfase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 | GO:GO:0006004 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 |
| GO:GO:0042175 | PFAM:PF10250 | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | EnsemblPlantsGene:SORBI_3002G387600 | unigene:Sbi.2363 |
| TMHMM:TMhelix | UniParc:UPI0001A83FA3 | RefSeq:XP_002463241.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:-:74170479..74172468
Molecular Weight (calculated)
65995.9 Da
IEP (calculated)
8.961
GRAVY (calculated)
-0.500
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDTDDVP DGGEDSPLFR RSGGPSSGSS VGDVPVSQSL IKAASNVCFS LFVLAVLVVT VVAVTYQPPD PWFQSSAAIT TSLSRVLPNS TFLVPDDSLL
101: PTGEDFNSSS SAPAVPAPAR DDNDDAAAAV SAASAAAAGN RTCDPDAPLN CSDPRVLAAV KAFNARAFFR KSIVFLSYET PVPGPKPGQC DVAWRFRNRR
201: EKSWRRYRDY RRFSLASGDG CALDIVSVGK FRSGTNAARR PYPKGPKRPR VSPPPVDAEI NDTIPVVGSE AEFKKGKYLY YMRGGDHCKS MNQFIWSFLC
301: GLGEAKFLNR TFVMDLNICL SGAHTVDGKD VDGKDFRYYF DFEHLKESVP VVEEGDFLKD WKRWDKKKKK GPGRITVRKV PSYKITPMQL KKDKSNIIWR
401: QFNGQEPENY WYRVCEGRAA KVIQRPWYAI WKSKRLMNIV TEIAGRMDWD YDGLHVVRGW KAQNKQMYPN LDSDTSPDAL VDKVTKLVKP WRNLYIATNE
501: PFYNYFDKLR SHFHIHLLDD YKELWSNTSE WYNETTTLSQ GKPVPFDAYM RVIVDTEVFY RSKAQVETFN NLTRDCKDGI NTCNL
101: PTGEDFNSSS SAPAVPAPAR DDNDDAAAAV SAASAAAAGN RTCDPDAPLN CSDPRVLAAV KAFNARAFFR KSIVFLSYET PVPGPKPGQC DVAWRFRNRR
201: EKSWRRYRDY RRFSLASGDG CALDIVSVGK FRSGTNAARR PYPKGPKRPR VSPPPVDAEI NDTIPVVGSE AEFKKGKYLY YMRGGDHCKS MNQFIWSFLC
301: GLGEAKFLNR TFVMDLNICL SGAHTVDGKD VDGKDFRYYF DFEHLKESVP VVEEGDFLKD WKRWDKKKKK GPGRITVRKV PSYKITPMQL KKDKSNIIWR
401: QFNGQEPENY WYRVCEGRAA KVIQRPWYAI WKSKRLMNIV TEIAGRMDWD YDGLHVVRGW KAQNKQMYPN LDSDTSPDAL VDKVTKLVKP WRNLYIATNE
501: PFYNYFDKLR SHFHIHLLDD YKELWSNTSE WYNETTTLSQ GKPVPFDAYM RVIVDTEVFY RSKAQVETFN NLTRDCKDGI NTCNL
001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
Arabidopsis Description
SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.