Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P00760_001 | Banana | golgi, plasma membrane | 78.63 | 81.71 |
| HORVU2Hr1G028070.1 | Barley | endoplasmic reticulum, plastid | 46.5 | 70.28 |
| VIT_06s0004g00600.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 61.54 | 64.52 |
| TraesCS2A01G154600.1 | Wheat | unclear | 62.05 | 62.37 |
| AT4G08810.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 58.8 | 62.32 |
| Os07t0633600-01 | Rice | golgi | 62.22 | 62.22 |
| CDX90695 | Canola | endoplasmic reticulum, golgi, plastid | 58.46 | 62.07 |
| TraesCS2B01G179800.1 | Wheat | endoplasmic reticulum, plastid | 62.05 | 61.84 |
| KRH58921 | Soybean | endoplasmic reticulum | 60.51 | 61.78 |
| CDY05025 | Canola | endoplasmic reticulum, golgi, plastid | 58.8 | 61.76 |
| Bra000656.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 58.63 | 61.69 |
| Zm00001d022247_P001 | Maize | plasma membrane | 61.03 | 61.45 |
| EER99762 | Sorghum | cytosol, endoplasmic reticulum, nucleus, plastid | 61.37 | 61.37 |
| PGSC0003DMT400082037 | Potato | endoplasmic reticulum, plasma membrane | 57.95 | 61.3 |
| KRH42826 | Soybean | nucleus | 59.83 | 60.87 |
| Solyc01g005690.2.1 | Tomato | plastid | 36.41 | 48.08 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion, plasma membrane | 42.22 | 46.25 |
| GSMUA_Achr5P13200_001 | Banana | mitochondrion | 40.85 | 45.35 |
| GSMUA_Achr1P03280_001 | Banana | mitochondrion | 30.94 | 43.1 |
| GSMUA_AchrUn_... | Banana | plastid | 42.56 | 42.35 |
| GSMUA_Achr5P27530_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 5.47 | 18.18 |
| GSMUA_Achr5P27540_001 | Banana | cytosol | 8.89 | 17.93 |
| GSMUA_Achr3P09270_001 | Banana | plasma membrane | 16.24 | 14.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P01490_001 | EnsemblPlants:GSMUA_Achr6T01490_001 | EnsemblPlantsGene:GSMUA_Achr6G01490_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0006004 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:GDP-Fuc_O-FucTrfase | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | PFAM:PF10250 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000295C964 | UniProt:M0T397 | MapMan:35.2 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G01490_001]
Coordinates
chr6:-:983908..985904
Molecular Weight (calculated)
66406.3 Da
IEP (calculated)
8.538
GRAVY (calculated)
-0.541
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDSGSDASA AAAERELPLS QKAVKVLGNV CFSAFVLSVL VFTVIAVTYQ PPDPWLDSPK AIISKSLAAT LPNATFRTDD SVLPTGEDLV PVPPRNDTAA
101: DAANDTIPAD PTNDTNPADP VNNATAADGA SVLLPSLPPP ASDCDADAPI NCSDPRALVA IRRFNARVFR RSIVFLSYEK PVPGSASGEC DAAWRFRNRR
201: EKSWRRYRDY RRFRLVPADN CTYEVVSAGK FRSGANAAPK PLPSRRSSSP SSPAQILDAE INDTIPTLGS DSDFRKGKYL YYTRGGDYCK GMNQYLWSFL
301: CALGEAQFLN RTLVMDLNIC LASTYNPSGR DEEGKDFRFY FDFEHLKESA SLVEESEFLR DWRRWERSSG RKTGGKITVH KVPTYKVTPM QLKKDKSTII
401: WRQFDGPEPE NYWYRVCEGR AAKYIQRPWQ AIWKSKHLMN IVSQIAGRMD WDYDAVHVVR GEKARNKELW PNLDADTSPE ALVQKLLKVI RQWRNLYIAT
501: NEPFYNYFDK LRSHYKVHLL DDYKEMWGNT SQWYNETMVL NNGRPVVFDG YMRVAVDTEV LYRAKNRVET FNNLTRDCKD GINTC
101: DAANDTIPAD PTNDTNPADP VNNATAADGA SVLLPSLPPP ASDCDADAPI NCSDPRALVA IRRFNARVFR RSIVFLSYEK PVPGSASGEC DAAWRFRNRR
201: EKSWRRYRDY RRFRLVPADN CTYEVVSAGK FRSGANAAPK PLPSRRSSSP SSPAQILDAE INDTIPTLGS DSDFRKGKYL YYTRGGDYCK GMNQYLWSFL
301: CALGEAQFLN RTLVMDLNIC LASTYNPSGR DEEGKDFRFY FDFEHLKESA SLVEESEFLR DWRRWERSSG RKTGGKITVH KVPTYKVTPM QLKKDKSTII
401: WRQFDGPEPE NYWYRVCEGR AAKYIQRPWQ AIWKSKHLMN IVSQIAGRMD WDYDAVHVVR GEKARNKELW PNLDADTSPE ALVQKLLKVI RQWRNLYIAT
501: NEPFYNYFDK LRSHYKVHLL DDYKEMWGNT SQWYNETMVL NNGRPVVFDG YMRVAVDTEV LYRAKNRVET FNNLTRDCKD GINTC
001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
Arabidopsis Description
SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.