Factsheet for TraesCS2A01G154600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, endoplasmic reticulum, nucleus, plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	59.97	90.18
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	89.0	88.25
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	81.27	80.85
Zm00001d022247_P001	Maize	plasma membrane	80.41	80.55
Os07t0633600-01	Rice	golgi	80.07	79.66
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	61.17	63.23
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	62.37	62.05
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	55.33	58.33
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	55.33	58.23
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	54.98	58.08
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	55.67	58.06
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	55.33	57.91
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	55.33	57.81
KRH42826	Soybean	nucleus	56.01	56.7
KRH58921	Soybean	endoplasmic reticulum	55.5	56.37
Solyc01g005690.2.1	Tomato	plastid	35.57	46.73
TraesCS1A01G142900.1	Wheat	unclear	41.58	38.78
TraesCS7A01G320300.1	Wheat	golgi	26.46	32.56
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	9.79	18.94

Protein Annotations

EnsemblPlants:TraesCS2A01G154600.1	EnsemblPlantsGene:TraesCS2A01G154600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0042175
InterPro:GDP-Fuc_O-FucTrfase	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	PFAM:PF10250	SEG:seg	TMHMM:TMhelix
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:101992518..101994586

Molecular Weight (calculated)

66080.1 Da

IEP (calculated)

9.059

GRAVY (calculated)

-0.542

Length

582 amino acids

Sequence
(BLAST)

001: MSSSNQEDHD EDAPLVRDPA ASSSSSRHHR PSASSSSAVG EVPVSQSLIK AASNVCFSFF VLAVLAVTVV AVTYQPPDPW LQSSAAITTS LARVLPNSSF
101: LLPDDSLLPT GEDFPSPSPS SDAADQAQAA VPSGINATAG TCDPDAPLNC TDPRVLAAVK AFNAKAFFRR SIVFLSYEAP VRGPKPGQCD VAWRFRNRRE
201: KSWRRYRDYR RFELAPADGC ALDITKVGKF RSGKNAARPP RPKGPKKPRV AAPPVDAEIN DTIPLVGSEA EFRRGKYLYY MRGGDHCKSM NQFIWSFLCG
301: LGEAKFLNRT FVMDLNMCLS GAHTEDGKDV DGKDFRYYFD FEHLKESVSL VEEGDFLKDW RRWDKKKGPG RISVRKVPTY KVTPMQLKRD KSNIIWRQFN
401: GHEPENYWYR VCEGRAAKVI QRPWYAIWKS KRLMNIVTEI AGRMDWDYDG LHVVRGWKAM NKKMYPNLDA DTSPDAIVDK VTKLIKPWRN LYIATNEPFY
501: NYFDKLRSHY HVHLLDDYKE LWSNTSEWYN ETTAINNGKD LPFDAYMKVI VDTEVFYRSK AKVETFNNLT RDCKDGINTC NL

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.