Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- plasma membrane 4
- vacuole 4
- golgi 4
- extracellular 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G151100.1 | Wheat | mitochondrion | 96.01 | 73.72 |
| TraesCS2B01G171800.1 | Wheat | mitochondrion | 96.01 | 73.72 |
| HORVU2Hr1G026040.3 | Barley | endoplasmic reticulum, golgi, mitochondrion, plastid | 94.35 | 70.65 |
| GSMUA_Achr5P27540_001 | Banana | cytosol | 64.45 | 66.9 |
| Zm00001d006931_P002 | Maize | plasma membrane | 81.73 | 61.81 |
| EER97624 | Sorghum | mitochondrion | 81.4 | 61.56 |
| KRH36835 | Soybean | endoplasmic reticulum | 67.11 | 52.47 |
| KRH71696 | Soybean | golgi | 67.44 | 52.05 |
| AT2G41150.2 | Thale cress | endoplasmic reticulum, golgi | 66.11 | 49.26 |
| Solyc10g078400.1.1 | Tomato | golgi | 65.45 | 49.25 |
| CDY51258 | Canola | endoplasmic reticulum, golgi, mitochondrion | 64.78 | 48.39 |
| AT3G56750.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 64.78 | 48.39 |
| PGSC0003DMT400021597 | Potato | golgi | 64.78 | 48.39 |
| Bra004601.1-P | Field mustard | endoplasmic reticulum, golgi, mitochondrion | 63.46 | 48.35 |
| CDX79955 | Canola | endoplasmic reticulum, golgi, mitochondrion | 64.12 | 48.25 |
| VIT_08s0040g01260.t01 | Wine grape | golgi | 63.79 | 48.24 |
| CDX67655 | Canola | endoplasmic reticulum, golgi, mitochondrion | 64.12 | 47.89 |
| CDY23872 | Canola | endoplasmic reticulum, golgi, mitochondrion | 63.46 | 47.87 |
| Bra007268.1-P | Field mustard | golgi | 63.46 | 47.39 |
| CDY65073 | Canola | endoplasmic reticulum, golgi | 62.79 | 46.9 |
| CDY27198 | Canola | endoplasmic reticulum, golgi, mitochondrion | 62.79 | 46.55 |
| Bra003250.1-P | Field mustard | golgi | 51.49 | 37.17 |
| GSMUA_Achr3P09270_001 | Banana | plasma membrane | 66.11 | 30.29 |
| TraesCS2A01G154600.1 | Wheat | unclear | 18.94 | 9.79 |
| TraesCS7A01G320300.1 | Wheat | golgi | 14.95 | 9.51 |
| TraesCS1A01G142900.1 | Wheat | unclear | 19.6 | 9.46 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G146500.1 | EnsemblPlantsGene:TraesCS2A01G146500 | Gene3D:3.40.50.11350 | InterPro:GDP-Fuc_O-FucTrfase | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF12 |
| PFAM:PF10250 | SignalP:SignalP-noTM | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:92311977..92314291
Molecular Weight (calculated)
34799.2 Da
IEP (calculated)
9.805
GRAVY (calculated)
-0.374
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMCNDTALW FLCRIFVMPS RMCLSSVHNT KGIIDSSNAT SNPRWETSYC AMESLYDIDL ISKTVPVVLD NPRSWYGIVS RSTKLGEGDV VHVQGVSRDE
101: LKDNPLYSDA LLVNRTASPL AWFMECKDRT KRTSVMLPYT FLPTMPARKL RVAARKIKEI LGEYDAIHVR RGDLLKNRKD RFGVERSLHP HLDRDTRPEF
201: IKRRIAKWIP KGRTLFIASN ERTPGFFSPL SDRYKLAYSS NFSSILEPII ENNYQLFMVE RLIMQGAKTF VKTMKELDSD LALCDDPKKN TKNWEVPVYT
301: R
101: LKDNPLYSDA LLVNRTASPL AWFMECKDRT KRTSVMLPYT FLPTMPARKL RVAARKIKEI LGEYDAIHVR RGDLLKNRKD RFGVERSLHP HLDRDTRPEF
201: IKRRIAKWIP KGRTLFIASN ERTPGFFSPL SDRYKLAYSS NFSSILEPII ENNYQLFMVE RLIMQGAKTF VKTMKELDSD LALCDDPKKN TKNWEVPVYT
301: R
001: MATMSKAQRT KPTSGSQRLV LFCIVVFSFL LLFSSVISTG KLGLPYQQTL IDYFVWSPRG KRQHSLSEKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS
101: LEEAMFLNRT FVMPSGMCIN PIHNKKGILN RSDNKTTEEG WLGSSCAMDS LYDIDLISEK IPVILDDSKT WHIVLSTSMK LGERGIAHVS GVTRHRLKES
201: HYSNLLIINR TASPLAWFVE CKDRSNRSAV MLPYSFLPNM AAAKLRNAAE KIKAQLGDYD AIHVRRGDKL KTRKDRFGVE RIQFPHLDRD TRPEFILRRI
301: EKRIPRGRTL FIGSNERKPG FFSPLAVRYK LAYSSNFSEI LDPIIENNYQ LFMMERLVMM GAKTYFKTFK EYETDLTLTD DPKKNKNWEI PVYTMDERRE
401: EAS
Arabidopsis Description
AT3g56750/T8M16_80 [Source:UniProtKB/TrEMBL;Acc:Q9LET2]
SUBAcon: [golgi,plastid,endoplasmic reticulum]
SUBAcon: [golgi,plastid,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.