CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	95.0	96.2
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	94.75	94.99
AT2G41150.2	Thale cress	endoplasmic reticulum, golgi	79.5	78.71
CDY65073	Canola	endoplasmic reticulum, golgi	76.75	76.18
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	77.0	75.86
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	75.0	74.44
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	74.75	74.19
Zm00001d010457_P001	Maize	cytosol	22.5	70.87
GSMUA_Achr5P27540_001	Banana	cytosol	47.5	65.52
KRH36835	Soybean	endoplasmic reticulum	63.0	65.45
KRH71696	Soybean	golgi	63.25	64.87
TraesCS2A01G146500.1	Wheat	endoplasmic reticulum	48.25	64.12
VIT_08s0040g01260.t01	Wine grape	golgi	62.0	62.31
Solyc10g078400.1.1	Tomato	golgi	61.0	61.0
PGSC0003DMT400021597	Potato	golgi	61.0	60.55
EER94809	Sorghum	mitochondrion	58.5	59.69
Os03t0366700-01	Rice	plastid	58.0	58.73
TraesCS2D01G151100.1	Wheat	mitochondrion	56.75	57.91
TraesCS2B01G171800.1	Wheat	mitochondrion	56.5	57.65
EER97624	Sorghum	mitochondrion	57.25	57.54
HORVU2Hr1G026040.3	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	57.0	56.72
Zm00001d006931_P002	Maize	plasma membrane	56.25	56.53
Zm00001d029266_P002	Maize	mitochondrion	58.25	49.26
Zm00001d004819_P001	Maize	mitochondrion	30.5	42.81
Zm00001d022294_P002	Maize	plastid	17.0	40.48
GSMUA_Achr3P09270_001	Banana	plasma membrane	59.5	36.23
Zm00001d016377_P001	Maize	nucleus	12.75	35.42
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	20.5	14.88
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	20.25	14.54
CDY27873	Canola	mitochondrion	19.25	14.53
CDY00855	Canola	mitochondrion	19.5	13.81

Protein Annotations

EnsemblPlants:CDX79955	EnsemblPlantsGene:GSBRNA2T00132817001	InterPro:GDP-Fuc_O-FucTrfase	KEGG:00052+2.4.1.22	KEGG:00514+2.4.1.221	PANTHER:PTHR31469
PANTHER:PTHR31469:SF8	PFAM:PF10250	ProteinID:CDX79955	ProteinID:CDX79955.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EDFBA0	UniPathway:UPA00378	MapMan:35.2	:	:	:

Description

BnaA05g02010D

Coordinates

chrLK031819:-:1028806..1030805

Molecular Weight (calculated)

45829.8 Da

IEP (calculated)

9.243

GRAVY (calculated)

-0.478

Length

400 amino acids

Sequence
(BLAST)

001: MATMSKTHRS KPTHGSKRLV LLSTLAVAAL LLLFFSSSFS TRGSGLVDYF SRSSRTKRQH SLSDKYLYWG DRVDCPGKNC ESCAGLGHQE SSLRCALEEA
101: MFLNRTFVMP SRMCINPIHN KKGVLNGSSD NESWEVSSCA MESLYDVDLI SEKIPVILDD SETWHIVLST AMKLKERGIA HVNGASRREL NDSSHYANLL
201: LINRTASPLA WFVECKDRID RSNVMLPYSF LPSMAAPRLR NAAEKIKAQL GDYDAIHVRR GDKLKTRRDR FNVERTQFPH LDRDTRPEFI MSRIQKQIPS
301: GRTLYIGSNE RTPGFFSPLS ARYKVAYSSN FSEILDPVIE NNYQLFMVER LVMMGAKTFF KTFREYETDL TLTDDPKKNK NWEIPVYTMD QDKEELKTTH

Best Arabidopsis Sequence Match ( AT2G41150.2 )
(BLAST)

001: MATMSKPHKL KATPGSQRLV LLCIVAVAFL LLFTSVISTG GLALPYRTTL IGYFVRSTRN KTQHSLSDKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSRMCIN PIHNKKGILN RSNNETREES WEVSSCAMES LYDIDLISEK IPVILDDSET WHIMLSTSMK LKERGSAHVY GANRHELNDS
201: SDFTNLLLIN RTASPLAWFV ECKDRGNRSD VMLPYSFLQT MAASRLRDAA EKIKAKLGDY DAIHVRRGDK LKTRKDRFRV ERSQFPHLDR DTRPEFIIGR
301: IQKQIPPGRT LFIGSNERTP DFFSPLAIRY KVAYSSNFSE ILDPIIENNY QLFMVERLIM MGAKTFFKTF REYETDLTLT DDPKKNKNWE IPVYTMDEGK
401: EAAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 57 Blast hit /.../7 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). [Source:TAIR;Acc:AT2G41150]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.