CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010457_P001	Maize	cytosol	27.81	85.83
Os03t0366700-01	Rice	plastid	80.87	80.25
Zm00001d029266_P002	Maize	mitochondrion	88.52	73.36
EER97624	Sorghum	mitochondrion	71.43	70.35
GSMUA_Achr5P27540_001	Banana	cytosol	48.21	65.17
KRH36835	Soybean	endoplasmic reticulum	61.73	62.86
KRH71696	Soybean	golgi	62.24	62.56
Solyc10g078400.1.1	Tomato	golgi	63.27	62.0
VIT_08s0040g01260.t01	Wine grape	golgi	60.46	59.55
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	59.69	59.24
CDX79955	Canola	endoplasmic reticulum, golgi, mitochondrion	59.69	58.5
CDY23872	Canola	endoplasmic reticulum, golgi, mitochondrion	59.18	58.15
Bra007268.1-P	Field mustard	golgi	58.93	57.32
PGSC0003DMT400021597	Potato	golgi	58.93	57.32
CDY65073	Canola	endoplasmic reticulum, golgi	58.67	57.07
AT2G41150.2	Thale cress	endoplasmic reticulum, golgi	58.67	56.93
CDY51258	Canola	endoplasmic reticulum, golgi, mitochondrion	58.42	56.82
CDY27198	Canola	endoplasmic reticulum, golgi, mitochondrion	58.67	56.65
AT3G56750.1	Thale cress	endoplasmic reticulum, golgi, plastid	57.91	56.33
CDX67655	Canola	endoplasmic reticulum, golgi, mitochondrion	57.65	56.08
Zm00001d004819_P001	Maize	mitochondrion	37.24	51.23
Zm00001d016377_P001	Maize	nucleus	16.33	44.44
Bra003250.1-P	Field mustard	golgi	46.68	43.88
GSMUA_Achr3P09270_001	Banana	plasma membrane	60.2	35.92
OQU89047	Sorghum	endoplasmic reticulum, golgi, vacuole	16.07	13.18
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	18.62	12.48
EER94138	Sorghum	mitochondrion	19.64	12.09

Protein Annotations

EnsemblPlants:EER94809	EnsemblPlantsGene:SORBI_3001G361200	EntrezGene:8082604	Gene3D:3.40.50.11350	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016757
InterPro:GDP-Fuc_O-FucTrfase	PANTHER:PTHR31469	PANTHER:PTHR31469:SF12	PFAM:PF10250	ProteinID:EER94809	ProteinID:EER94809.1
RefSeq:XP_002467811.1	SEG:seg	UniParc:UPI0001A83376	UniProt:C5WYR3	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:-:65102462..65105510

Molecular Weight (calculated)

43962.0 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.406

Length

392 amino acids

Sequence
(BLAST)

001: MAIPPRITAA GGGGRKPRVP PLPPARTLLT AFAAAAALAV LCLVSSSPTA SLSGSWRSGA RSGEKYLYWG SRVDCPGKHC GSCAGLGHQE SSLRCALEEA
101: LFLGRTFVMP SRMCLSSVHN TKGVIQSDAT TKQRWEESSC AMESLYDIDQ ISRTVPVILD NSKRWHDIVS RSMKLEVGGV AHVQGISRGE LKQNPLYSTT
201: LVINRTASPL AWFMECKDRK NRSSVMLSYK FLPSMPAQKL RDAANKMKET LGDYDAIHVR RGDLLKNRKD RFGVERSLHP HLDRDTRPEY IRKRIAKWIP
301: PGRTLYIASN ERTPGFFSAL SDRYKLAYSS NFSSILDPII ENNYQLFMVE RLMMQGAKTF VKTMREFDSD LTLCDDPKKN TKVWQKPVYT DD

Best Arabidopsis Sequence Match ( AT2G41150.2 )
(BLAST)

001: MATMSKPHKL KATPGSQRLV LLCIVAVAFL LLFTSVISTG GLALPYRTTL IGYFVRSTRN KTQHSLSDKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSRMCIN PIHNKKGILN RSNNETREES WEVSSCAMES LYDIDLISEK IPVILDDSET WHIMLSTSMK LKERGSAHVY GANRHELNDS
201: SDFTNLLLIN RTASPLAWFV ECKDRGNRSD VMLPYSFLQT MAASRLRDAA EKIKAKLGDY DAIHVRRGDK LKTRKDRFRV ERSQFPHLDR DTRPEFIIGR
301: IQKQIPPGRT LFIGSNERTP DFFSPLAIRY KVAYSSNFSE ILDPIIENNY QLFMVERLIM MGAKTFFKTF REYETDLTLT DDPKKNKNWE IPVYTMDEGK
401: EAAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 57 Blast hit /.../7 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). [Source:TAIR;Acc:AT2G41150]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.