CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032819_P001	Maize	plasma membrane	97.33	97.33
Os10t0456400-01	Rice	golgi, mitochondrion	81.95	81.69
TraesCS1D01G141700.1	Wheat	mitochondrion	79.43	81.09
TraesCS1A01G142900.1	Wheat	unclear	79.28	80.93
TraesCS1B01G158900.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	79.28	80.16
GSMUA_Achr5P13200_001	Banana	mitochondrion	52.9	63.95
CDY27873	Canola	mitochondrion	50.71	60.94
VIT_12s0057g01310.t01	Wine grape	mitochondrion	53.22	60.86
GSMUA_Achr1P03280_001	Banana	mitochondrion	39.25	59.52
Bra015145.1-P	Field mustard	mitochondrion	51.96	59.0
KRH16980	Soybean	mitochondrion	52.59	58.88
Solyc07g045210.1.1	Tomato	golgi, mitochondrion	53.69	58.76
PGSC0003DMT400044798	Potato	golgi, mitochondrion	53.53	58.59
KRH72615	Soybean	mitochondrion	52.28	58.52
CDY00855	Canola	mitochondrion	51.49	58.05
Solyc12g006200.1.1	Tomato	golgi, mitochondrion, nucleus, plasma membrane	52.43	57.89
PGSC0003DMT400074186	Potato	cytosol, golgi, mitochondrion, plasma membrane	52.12	57.64
AT2G04280.1	Thale cress	mitochondrion	51.18	57.39
AT4G12700.1	Thale cress	mitochondrion	49.92	56.68
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	39.56	43.08
OQU89047	Sorghum	endoplasmic reticulum, golgi, vacuole	29.04	38.7
EER94809	Sorghum	mitochondrion	12.09	19.64
EER97624	Sorghum	mitochondrion	12.24	19.6

Protein Annotations

MapMan:35.2	EntrezGene:8059283	UniProt:C5WZI3	EnsemblPlants:EER94138	ProteinID:EER94138	ProteinID:EER94138.1
InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016757	PFAM:PF10250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2
EnsemblPlantsGene:SORBI_3001G231200	unigene:Sbi.9042	TMHMM:TMhelix	UniParc:UPI0001A82948	RefSeq:XP_002467140.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:22336849..22339131

Molecular Weight (calculated)

71196.6 Da

IEP (calculated)

5.484

GRAVY (calculated)

-0.416

Length

637 amino acids

Sequence
(BLAST)

001: MLGRAAALSA RRWRGGVPDL RAALRSGGNL LFALFVAAVL AFTLLAAVHS PDDPLLHPSS HQLTDFLTSS TSTSTFLTDD SVLRTGEDFN SSSTGAAGEA
101: AAGGVEVVAE AVPFIKLSEV GAEAEKTEPE TERAVTVDTD AATGEGAAVA EETAVAEAVS CDTEAPVDCT GDRELFNLLM RAAIERFPDL HFYRFGRPVA
201: VPGSPMECDL AWRFRPAADA IGTGRTTYYK DYRRFTLTRD INTCTLVVDT VGEYHSGVGA KRNGRRKGKK GKKGKQDAPV TDFVPAKTQI RLDENTANNE
301: AAGAAAEPVF VVGEAVNDSL PVVASESDFS RGKYLIYIGG GERCKSMNHF IWGFLCALGE AQFLNRTLVM DLNVCLNARY TSSGKDEDRD FRLYFDFEHL
401: KQSASVIDQS QFWQDWGKWH KKDRLKNFYT EDIRMTPMKL RDIKDTLIMR KFGNVEPDNY WSRVCEGETE GVIKRPWHFL WKSRRLMEIV SAIASRMNWD
501: FDSVHVVRGE KAQNTRLWPN LDRDTSPDSI LASLNDKVGA GRYLYIATNE PDKSFFDPLK EKYKTHFLDD FKYLWDENSE WFTETKELSN GKPVEFDGYM
601: RIAVDTEVFL RGKRHVETFN ELTRDCKDGV NTCPASS

Best Arabidopsis Sequence Match ( AT4G12700.1 )
(BLAST)

001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S

Arabidopsis Description

At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.