Factsheet for Solyc12g006200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
golgi 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074186	Potato	cytosol, golgi, mitochondrion, plasma membrane	97.23	97.4
Solyc07g045210.1.1	Tomato	golgi, mitochondrion	83.36	82.65
VIT_12s0057g01310.t01	Wine grape	mitochondrion	74.18	76.84
KRH16980	Soybean	mitochondrion	74.35	75.4
KRH72615	Soybean	mitochondrion	73.48	74.52
CDY27873	Canola	mitochondrion	67.07	73.02
Bra015145.1-P	Field mustard	mitochondrion	69.67	71.66
CDY00855	Canola	mitochondrion	69.15	70.62
AT2G04280.1	Thale cress	mitochondrion	69.5	70.6
AT4G12700.1	Thale cress	mitochondrion	68.46	70.41
GSMUA_AchrUn_...	Banana	golgi, mitochondrion, plasma membrane	59.97	64.79
GSMUA_AchrUn_...	Banana	plastid	60.14	59.01
Os10t0456400-01	Rice	golgi, mitochondrion	58.41	52.74
EER94138	Sorghum	mitochondrion	57.89	52.43
TraesCS1A01G142900.1	Wheat	unclear	56.67	52.4
TraesCS1D01G141700.1	Wheat	mitochondrion	56.67	52.4
Zm00001d032819_P001	Maize	plasma membrane	57.71	52.28
TraesCS1B01G158900.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	56.85	52.06
Os01t0805100-01	Rice	mitochondrion	26.34	44.71
TraesCS7B01G221300.2	Wheat	golgi	35.01	42.71
TraesCS7A01G320300.1	Wheat	golgi	34.84	42.49
TraesCS7D01G317200.1	Wheat	golgi	34.66	42.28
Zm00001d019764_P001	Maize	golgi, mitochondrion	33.1	41.89
HORVU7Hr1G076590.2	Barley	endoplasmic reticulum, golgi	34.49	40.2
OQU89047	Sorghum	endoplasmic reticulum, golgi, vacuole	32.24	38.91
Solyc01g005690.2.1	Tomato	plastid	27.56	35.89
Solyc10g078400.1.1	Tomato	golgi	12.65	18.25

Protein Annotations

EnsemblPlants:Solyc12g006200.1.1	EnsemblPlantsGene:Solyc12g006200.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31469
PANTHER:PTHR31469:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276A63B	UniProt:K4DBF7	MapMan:35.2

Description

No Description!

Coordinates

chr12:+:740265..741998

Molecular Weight (calculated)

65701.0 Da

IEP (calculated)

5.881

GRAVY (calculated)

-0.549

Length

577 amino acids

Sequence
(BLAST)

001: MVGRSPSLLS RNGSFRPENL GQNTLAIIGN LCFTIFVVGV LIFTIMAATY EPEDPLFHPS TKITNFLTSK SDATFKADDT VMKTGEDFIG ANQKAFSTFI
101: NLTDVDVSLS ATDSGTESDP DCHGKTDEPI DCNDPDVFHL LMRVAIEKFK DIHFYRFGKS VRGSNDSSCH MAWRFRPKDG KTAAFYKDYR EFVVSRSENC
201: TLSVVSIGEY HTGGNARKRK RKSKDRISGK SDEGFEKAAK TGGQNVALPE VGEAVNDSLP VVESESSFKR GKYLVYHGGG DRCKSMNHYL WSFMCALGEA
301: QYLNRTLIMD LSICLSKIYT SSGVDEEGKD FRFYFDFEHL KNSASVLDQE QFWADWEKWH QKDGLSLHLV EDFRVTPMKL SEQKDTLIVR KFGNVEPDNY
401: WYRVCEGETE SVVQRPWHLV WKSRRLMDIV SAIASRLNWD YDSVHVVRGE KARNREMWPH LAEDTSPDSL LSSLKNKIDD GRNLYIATNE QETSFFNPLK
501: DKYSTHFLGD YKDLWDEGSE WYLDTAKLHN GSPVEFDGYM RVSVDTEVFL RGKKQIETFN DLTKDCKDGI NTCTSSS

Best Arabidopsis Sequence Match ( AT4G12700.1 )
(BLAST)

001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S

Arabidopsis Description

At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.