Factsheet for Solyc01g005690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 3
vacuole 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	golgi

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	85.78	68.72
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	59.82	48.01
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	60.05	47.84
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	59.14	47.55
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	59.37	47.22
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	57.56	45.7
KRH58921	Soybean	endoplasmic reticulum	57.34	44.33
KRH42826	Soybean	nucleus	56.66	43.65
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	47.63	37.48
Os07t0633600-01	Rice	golgi	48.31	36.58
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	48.08	36.41
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	48.08	36.41
Zm00001d022247_P001	Maize	plasma membrane	47.63	36.32
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	47.4	35.78
TraesCS2A01G154600.1	Wheat	unclear	46.73	35.57
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	28.89	33.07
Solyc07g045210.1.1	Tomato	golgi, mitochondrion	36.79	28.01
Solyc12g006200.1.1	Tomato	golgi, mitochondrion, nucleus, plasma membrane	35.89	27.56
Solyc10g078400.1.1	Tomato	golgi	7.22	8.0

Protein Annotations

EnsemblPlants:Solyc01g005690.2.1	EnsemblPlantsGene:Solyc01g005690.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0016021
GO:GO:0042175	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002761CD8
UniProt:K4ASD5	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1:-:478540..480386

Molecular Weight (calculated)

51623.6 Da

IEP (calculated)

9.087

GRAVY (calculated)

-0.395

Length

443 amino acids

Sequence
(BLAST)

001: MKYLFNPHFS FLQKRTLFLQ TLLKIQFFFI KIEFLFKIQS FLLLKFEGFE VFVEMKDSTT DPIGQNLIKV ISNVCFSVFV FSVLIITVIA ITYQPPDPWE
101: SSRALTRVFT QVENATFKVD NSVLKTGEDV ASSPIEAPAG AFALVPITEA IIEKSEENLS NETLKSGCED VNVVNCSDPR VLYTIERFNL KAFKSIAFLD
201: YRTPVNGSKP NECDVAWRFR NRKERSWRKY RDFRRFKIGF TDDCSYKVVH AGRWRSGVNA RRPRIRVNST RTSTRAKIAP PVIDEEINDT IPIMGSDSDF
301: KNGRYLYYSR GGDYCKGMNQ YMWSFLCALG EAQYLNRTFV MDLSICLASS HTSSHKDEEG KDFRFYFDFE HLKETASIVE EGDFHKDWRK WNKAHKKKIS
401: VRKVKDYKVS PDQLLKDKST IIWRQFDAPE PENYWYRVCE GPS

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.