Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000656.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 90.4 | 89.75 |
| CDX90695 | Canola | endoplasmic reticulum, golgi, plastid | 89.49 | 89.66 |
| CDY05025 | Canola | endoplasmic reticulum, golgi, plastid | 89.49 | 88.69 |
| VIT_06s0004g00600.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 73.37 | 72.58 |
| PGSC0003DMT400082037 | Potato | endoplasmic reticulum, plasma membrane | 72.1 | 71.97 |
| KRH58921 | Soybean | endoplasmic reticulum | 71.01 | 68.41 |
| KRH42826 | Soybean | nucleus | 70.65 | 67.83 |
| HORVU2Hr1G028070.1 | Barley | endoplasmic reticulum, plastid | 45.11 | 64.34 |
| GSMUA_Achr4P00760_001 | Banana | golgi, plasma membrane | 61.41 | 60.21 |
| Solyc01g005690.2.1 | Tomato | plastid | 48.01 | 59.82 |
| GSMUA_Achr6P01490_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 62.32 | 58.8 |
| Os07t0633600-01 | Rice | golgi | 59.6 | 56.24 |
| TraesCS2B01G179800.1 | Wheat | endoplasmic reticulum, plastid | 58.88 | 55.37 |
| TraesCS2A01G154600.1 | Wheat | unclear | 58.33 | 55.33 |
| Zm00001d022247_P001 | Maize | plasma membrane | 58.15 | 55.25 |
| EER99762 | Sorghum | cytosol, endoplasmic reticulum, nucleus, plastid | 58.33 | 55.04 |
| AT4G12700.1 | Thale cress | mitochondrion | 45.83 | 45.1 |
| AT2G04280.1 | Thale cress | mitochondrion | 46.38 | 45.07 |
| AT3G56750.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 14.31 | 19.6 |
| AT2G41150.2 | Thale cress | endoplasmic reticulum, golgi | 14.31 | 19.55 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826452 | UniProt:A0A178UWI5 | ProteinID:AEE82680.1 | ArrayExpress:AT4G08810 | EnsemblPlantsGene:AT4G08810 |
| RefSeq:AT4G08810 | TAIR:AT4G08810 | RefSeq:AT4G08810-TAIR-G | EnsemblPlants:AT4G08810.1 | TAIR:AT4G08810.1 | EMBL:AY056392 |
| EMBL:BT002655 | ProteinID:CAB78006.1 | ProteinID:CAB82117.1 | InterPro:GDP-Fuc_O-FucTrfase | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005975 | GO:GO:0006004 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0042175 | EMBL:KY906074 | RefSeq:NP_192621.1 |
| ProteinID:OAO97252.1 | PFAM:PF10250 | PO:PO:0000293 | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | UniProt:Q9LE45 |
| Symbol:SUB1 | TMHMM:TMhelix | UniParc:UPI00000ABFE2 | SEG:seg | : | : |
Description
SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
Coordinates
chr4:-:5615921..5618066
Molecular Weight (calculated)
64195.0 Da
IEP (calculated)
8.840
GRAVY (calculated)
-0.593
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.