CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 3
extracellular 3
nucleus 1
vacuole 3
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42826	Soybean	nucleus	88.66	88.35
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	70.68	72.58
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	68.41	71.01
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	68.06	70.52
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	67.19	69.87
Bra000656.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	67.71	69.78
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	67.54	69.48
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	44.15	65.37
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	61.43	62.52
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	61.78	60.51
Zm00001d022247_P001	Maize	plasma membrane	58.46	57.66
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	58.81	57.61
Solyc01g005690.2.1	Tomato	plastid	44.33	57.34
Os07t0633600-01	Rice	golgi	58.29	57.09
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	57.07	55.71
TraesCS2A01G154600.1	Wheat	unclear	56.37	55.5
KRH72615	Soybean	mitochondrion	46.77	47.1
KRH16980	Soybean	mitochondrion	46.42	46.75
KRH71696	Soybean	golgi	12.91	18.97
KRH36835	Soybean	endoplasmic reticulum	12.39	18.44

Protein Annotations

EntrezGene:100802779	MapMan:35.2	EMBL:ACUP02003293	InterPro:GDP-Fuc_O-FucTrfase	EnsemblPlantsGene:GLYMA_05G156200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	UniProt:I1K3W7	EnsemblPlants:KRH58921
ProteinID:KRH58921	ProteinID:KRH58921.1	PFAM:PF10250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	TMHMM:TMhelix
UniParc:UPI0002339F46	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:34876591..34879431

Molecular Weight (calculated)

65968.6 Da

IEP (calculated)

8.311

GRAVY (calculated)

-0.605

Length

573 amino acids

Sequence
(BLAST)

001: MSSNSSRTEP IAQNIIKLIS NLCFSVFVFS VLIFTVIAIT YHPPDPWLES TPALTNLFTQ SQNATFRIDS SVLKTGEDLA PSPQDPPLPS PPPSASAVTE
101: AVIEKSEQQI ANSTANSTAD STDSTDAALP SPPACDGTIN CSNPRVRIAI QRFNLRAFKS IAFFDYQPPV NGSVAGECDV AWRFRNKRER SWRKYRDFRR
201: FKIAVTDDCR YKVVHAGGWH SGANARRNMT RSGAARGGKT LPPRASARDD EINDTIPTLG SETNFRNGKY LYYSRGGDYC KGMNHYLWSF LCGLGEAMFL
301: NRTFVMDLSV CLASTYNPSN KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKNWDKTH LKKKIPVRKV VNHKVTPMQL KKDKSTIIWR QFDAPEPENY
401: WYRVCEGEAA KNIQRPWHAV WKSKRLMNIV TEISGRLDWD FDAVHVVRGE KAQNKELWPH LDYDTSPDVL VEKLKWMVQP WRHLYIATNE PYYNYFDKLR
501: SNYKVHLLDD YKELWGNTSE WYNETTLLNN GKPVEFDGYM RVAVDTEVFY RGKTRVETFY NLTKDCKDGV NTC

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.