Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G028070.1 | Barley | endoplasmic reticulum, plastid | 60.65 | 91.99 |
| TraesCS2A01G154600.1 | Wheat | unclear | 88.25 | 89.0 |
| Os07t0633600-01 | Rice | golgi | 84.16 | 84.44 |
| Zm00001d022247_P001 | Maize | plasma membrane | 81.77 | 82.62 |
| EER99762 | Sorghum | cytosol, endoplasmic reticulum, nucleus, plastid | 80.75 | 81.03 |
| GSMUA_Achr4P00760_001 | Banana | golgi, plasma membrane | 61.5 | 64.12 |
| GSMUA_Achr6P01490_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 61.84 | 62.05 |
| VIT_06s0004g00600.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 56.39 | 59.32 |
| AT4G08810.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 55.37 | 58.88 |
| PGSC0003DMT400082037 | Potato | endoplasmic reticulum, plasma membrane | 55.37 | 58.77 |
| CDX90695 | Canola | endoplasmic reticulum, golgi, plastid | 55.03 | 58.62 |
| Bra000656.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 55.37 | 58.45 |
| CDY05025 | Canola | endoplasmic reticulum, golgi, plastid | 55.37 | 58.35 |
| KRH58921 | Soybean | endoplasmic reticulum | 55.71 | 57.07 |
| KRH42826 | Soybean | nucleus | 55.71 | 56.87 |
| Solyc01g005690.2.1 | Tomato | plastid | 35.78 | 47.4 |
| TraesCS1B01G158900.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 40.89 | 38.1 |
| TraesCS7B01G221300.2 | Wheat | golgi | 25.89 | 32.14 |
| TraesCS2B01G171800.1 | Wheat | mitochondrion | 11.93 | 17.86 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G179800.1 | EnsemblPlantsGene:TraesCS2B01G179800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0016020 | GO:GO:0042175 |
| InterPro:GDP-Fuc_O-FucTrfase | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | PFAM:PF10250 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:154269479..154271242
Molecular Weight (calculated)
66227.3 Da
IEP (calculated)
8.860
GRAVY (calculated)
-0.521
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSDQEDHD EDAPLVRDPA APSSSSRRPS ASSSAVGEVP VSQSLIKAAS NVCFSFFVLA VLAVTVVAVT YQPPDPWLQS SAAITTSLAR VLPNSSFLQP
101: DDSLLPTGED FPSPSAAPGA AAAAQRDAAD QAATAPGINA TAAAGTCDPD APLNCTDPRV LAAVKAFNAK AFFRKSIVFL SYEAPVPGPK PGQCDVAWRF
201: RNRREKSWRR YRDYRRFELA PGDGCALDIT KVGKFRSGKN AARPPRPKGS KKPRVAPPPV DAEINDTIPL VGSEAEFRRG KYLYYMRGGD HCKSMNQFIW
301: SFLCGLGEAK FLNRTFVMDL NMCLSGAHTE DGKDVDGKDF RYYFDFEHLK ESVSLVEEGD FLKDWRRWDK KKGPGRISVR KVPTYKVTPM QLKRDKSNII
401: WRQFDGHEPE NYWYRVCEGR AAKVIQRPWY AIWKSKRLMN IVTEIAGRMD WDYDGLHVVR GWKAMNKKMY PNLDADTSPD AIVDKVTKLI KPWRNLYIAT
501: NEPFYNYFDK LRSHYHVHLL EDYKELWSNT SEWYNETTAI NSGKDVPFDA YMKVIVDTEV FYRSKAKVET FNNLTRDCKD GINTCNL
101: DDSLLPTGED FPSPSAAPGA AAAAQRDAAD QAATAPGINA TAAAGTCDPD APLNCTDPRV LAAVKAFNAK AFFRKSIVFL SYEAPVPGPK PGQCDVAWRF
201: RNRREKSWRR YRDYRRFELA PGDGCALDIT KVGKFRSGKN AARPPRPKGS KKPRVAPPPV DAEINDTIPL VGSEAEFRRG KYLYYMRGGD HCKSMNQFIW
301: SFLCGLGEAK FLNRTFVMDL NMCLSGAHTE DGKDVDGKDF RYYFDFEHLK ESVSLVEEGD FLKDWRRWDK KKGPGRISVR KVPTYKVTPM QLKRDKSNII
401: WRQFDGHEPE NYWYRVCEGR AAKVIQRPWY AIWKSKRLMN IVTEIAGRMD WDYDGLHVVR GWKAMNKKMY PNLDADTSPD AIVDKVTKLI KPWRNLYIAT
501: NEPFYNYFDK LRSHYHVHLL EDYKELWSNT SEWYNETTAI NSGKDVPFDA YMKVIVDTEV FYRSKAKVET FNNLTRDCKD GINTCNL
001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
Arabidopsis Description
SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.