Factsheet for Bra000656.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90695	Canola	endoplasmic reticulum, golgi, plastid	98.02	98.91
CDY05025	Canola	endoplasmic reticulum, golgi, plastid	97.66	97.49
AT4G08810.1	Thale cress	endoplasmic reticulum, golgi, plastid	89.75	90.4
VIT_06s0004g00600.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	71.58	71.33
PGSC0003DMT400082037	Potato	endoplasmic reticulum, plasma membrane	70.5	70.89
KRH42826	Soybean	nucleus	70.32	68.0
KRH58921	Soybean	endoplasmic reticulum	69.78	67.71
HORVU2Hr1G028070.1	Barley	endoplasmic reticulum, plastid	44.42	63.82
GSMUA_Achr4P00760_001	Banana	golgi, plasma membrane	61.33	60.57
Solyc01g005690.2.1	Tomato	plastid	47.84	60.05
GSMUA_Achr6P01490_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	61.69	58.63
Os07t0633600-01	Rice	golgi	58.63	55.73
Zm00001d022247_P001	Maize	plasma membrane	58.09	55.59
EER99762	Sorghum	cytosol, endoplasmic reticulum, nucleus, plastid	58.27	55.38
TraesCS2B01G179800.1	Wheat	endoplasmic reticulum, plastid	58.45	55.37
TraesCS2A01G154600.1	Wheat	unclear	57.91	55.33
Bra015145.1-P	Field mustard	mitochondrion	45.5	45.1
Bra004601.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	14.93	21.01
Bra007268.1-P	Field mustard	golgi	14.39	19.85
Bra003250.1-P	Field mustard	golgi	12.41	16.55

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra000656	EnsemblPlants:Bra000656.1	EnsemblPlants:Bra000656.1-P	InterPro:GDP-Fuc_O-FucTrfase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0006004	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	GO:GO:0042175	UniProt:M4C8X8
PFAM:PF10250	PANTHER:PTHR31469	PANTHER:PTHR31469:SF2	TMHMM:TMhelix	UniParc:UPI0002540274	SEG:seg

Description

AT4G08810 (E=5e-285) SUB1 | SUB1; calcium ion binding

Coordinates

chrA03:-:12322186..12323856

Molecular Weight (calculated)

64409.3 Da

IEP (calculated)

8.751

GRAVY (calculated)

-0.571

Length

556 amino acids

Sequence
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFP VLIFTVIAVT YQPPDPWLES APALTKLLTA NENATFKIDG SILNTGEDIA SSPISPPANS TRPVTEATIE
101: LSEEKIGNMT VNSSSVDCDD LKVVNCSDPR VLVAVQRFNL RIFKSIVFLE YETPVNGSKP DECDVSWRFR NKKEKSWRRY RDFRRFKFAF GENCTYKVFH
201: TSGWHSGVNA RRFRIKPRGG GGGPKATRGV GRDPEINDTI PTLGSQTNFR RGKYLYYSRG GDYCKGMNQY MWSFLCGLGE AMYLNRTFVM DLSLCLSSSY
301: SSKGVDEEGK DFRYYFDFEH LKESASIVEE GEFVRDWKKW NRSHKRKVPV RKVKTHKVSP LQLSKDKSTI IWRQFDAPEP ENYWYRVCEG QASKYVERPW
401: QTLWKSKRLM NIVSEISGKM DWDFDAVHVV RGEKAKDKKL WPHLDEDTWP DAILNKLRGL VQPWRNLYVA TNEPFYNYFD KLRSQYKVHL LDDYSYLWGN
501: NSEWYNETSL LNNGKPVEFD GYMRVAVDTE VFIRGKTRVE TFNNLTMDCK DGINTC

Best Arabidopsis Sequence Match ( AT4G08810.1 )
(BLAST)

001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC

Arabidopsis Description

SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.