Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
25769308
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G141700.1 | Wheat | mitochondrion | 98.56 | 98.56 |
| TraesCS1B01G158900.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 97.76 | 96.83 |
| Os10t0456400-01 | Rice | golgi, mitochondrion | 82.69 | 80.75 |
| Zm00001d032819_P001 | Maize | plasma membrane | 80.93 | 79.28 |
| EER94138 | Sorghum | mitochondrion | 80.93 | 79.28 |
| GSMUA_Achr5P13200_001 | Banana | mitochondrion | 54.49 | 64.52 |
| GSMUA_Achr1P03280_001 | Banana | mitochondrion | 40.22 | 59.76 |
| CDY27873 | Canola | mitochondrion | 50.64 | 59.62 |
| VIT_12s0057g01310.t01 | Wine grape | mitochondrion | 53.04 | 59.43 |
| KRH16980 | Soybean | mitochondrion | 53.53 | 58.7 |
| KRH72615 | Soybean | mitochondrion | 53.37 | 58.52 |
| Bra015145.1-P | Field mustard | mitochondrion | 52.56 | 58.47 |
| CDY00855 | Canola | mitochondrion | 52.72 | 58.23 |
| AT2G04280.1 | Thale cress | mitochondrion | 52.4 | 57.57 |
| PGSC0003DMT400044798 | Potato | golgi, mitochondrion | 53.69 | 57.56 |
| Solyc07g045210.1.1 | Tomato | golgi, mitochondrion | 53.69 | 57.56 |
| Solyc12g006200.1.1 | Tomato | golgi, mitochondrion, nucleus, plasma membrane | 52.4 | 56.67 |
| PGSC0003DMT400074186 | Potato | cytosol, golgi, mitochondrion, plasma membrane | 52.24 | 56.6 |
| AT4G12700.1 | Thale cress | mitochondrion | 50.8 | 56.51 |
| TraesCS7A01G320300.1 | Wheat | golgi | 32.21 | 42.49 |
| TraesCS2A01G154600.1 | Wheat | unclear | 38.78 | 41.58 |
| TraesCS2A01G146500.1 | Wheat | endoplasmic reticulum | 9.46 | 19.6 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G142900.1 | EnsemblPlantsGene:TraesCS1A01G142900 | InterPro:GDP-Fuc_O-FucTrfase | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | PFAM:PF10250 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:245115482..245117356
Molecular Weight (calculated)
70400.6 Da
IEP (calculated)
5.370
GRAVY (calculated)
-0.523
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGRGVGMSA PQWRGGALDL RAALRSGGNL LFGLFVAAVL AFTLLAAVHS PDDPLLHPSS HQLTAFLTSA TSNSTFLADD SVLRTGEDFA TASNTSEDAH
101: ATVGPKFIEL SDVGSEKTEV ETEQSVTVDT DTDSNSAAQE DKPIVEAVSC DTEAPVDCTG DRELFNLLMR TSIERFPDLH FYRFGRPVVV PESPMACDLA
201: WRFRPAEDAR GRTTYYKDYR RFTLTRDINT CSLVVESIGE YHSGTGAKRS GRRKGKKGKK GKREAPVTTD FVPAKTQMRI DENGANADTT TAADQVFVVG
301: DAVNDSMPVV ASESDFSRGR YLIYMGGGER CKSMNHYIWG LLCALGEAQF LNRTLVMDFN VCLNSRYTAS GKDEEKDFRL YFDFEHLKES ASVIDQSQFW
401: TDWGKWHKKD RLKNHYTEDI KVTPMKLRDV KDTLIMRKFG HVEPDNYWSR VCEGETEAMI KRPWHFLWKS RRLMEIVSAI ASRMSWDFDS MHVVRGEKAQ
501: NTQLWPNLDA DTSPENLLTT LNDKVGAGRY LYIATDESDK SFFDPLKNKY KTRFLDDFKD LWDENSEWYA ETKELNNGKP VEFDGYMRVA VDTEVFLRGK
601: RKLETFNDLT QDCKDGVNTC AASA
101: ATVGPKFIEL SDVGSEKTEV ETEQSVTVDT DTDSNSAAQE DKPIVEAVSC DTEAPVDCTG DRELFNLLMR TSIERFPDLH FYRFGRPVVV PESPMACDLA
201: WRFRPAEDAR GRTTYYKDYR RFTLTRDINT CSLVVESIGE YHSGTGAKRS GRRKGKKGKK GKREAPVTTD FVPAKTQMRI DENGANADTT TAADQVFVVG
301: DAVNDSMPVV ASESDFSRGR YLIYMGGGER CKSMNHYIWG LLCALGEAQF LNRTLVMDFN VCLNSRYTAS GKDEEKDFRL YFDFEHLKES ASVIDQSQFW
401: TDWGKWHKKD RLKNHYTEDI KVTPMKLRDV KDTLIMRKFG HVEPDNYWSR VCEGETEAMI KRPWHFLWKS RRLMEIVSAI ASRMSWDFDS MHVVRGEKAQ
501: NTQLWPNLDA DTSPENLLTT LNDKVGAGRY LYIATDESDK SFFDPLKNKY KTRFLDDFKD LWDENSEWYA ETKELNNGKP VEFDGYMRVA VDTEVFLRGK
601: RKLETFNDLT QDCKDGVNTC AASA
001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S
Arabidopsis Description
At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.