Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 2
- nucleus 1
- extracellular 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P09270_001 | Banana | plasma membrane | 35.8 | 9.59 |
| Zm00001d006021_P001 | Maize | cytosol | 2.84 | 7.58 |
| GSMUA_Achr1P03280_001 | Banana | mitochondrion | 17.61 | 7.38 |
| GSMUA_Achr5P13200_001 | Banana | mitochondrion | 21.02 | 7.02 |
| GSMUA_AchrUn_... | Banana | plastid | 21.59 | 6.46 |
| GSMUA_AchrUn_... | Banana | golgi, mitochondrion, plasma membrane | 18.75 | 6.18 |
| PGSC0003DMT400003520 | Potato | mitochondrion | 5.68 | 6.1 |
| GSMUA_Achr4P00760_001 | Banana | golgi, plasma membrane | 17.61 | 5.51 |
| GSMUA_Achr6P01490_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 18.18 | 5.47 |
| PGSC0003DMT400048710 | Potato | extracellular | 3.41 | 3.43 |
| GSMUA_Achr5P27540_001 | Banana | cytosol | 4.55 | 2.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P27530_001 | EnsemblPlants:GSMUA_Achr5T27530_001 | EnsemblPlantsGene:GSMUA_Achr5G27530_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR31469 | PANTHER:PTHR31469:SF8 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295509F | UniProt:M0T278 |
| MapMan:35.2 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G27530_001]
Coordinates
chr5:+:28014640..28015170
Molecular Weight (calculated)
19761.0 Da
IEP (calculated)
8.493
GRAVY (calculated)
0.102
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNWHYNAVN MGDCGRKREI RPPSPMAISR FPRGKEKPRS LIVPLLFAIS AAALALLWVA FYSAVPASLF FSIASPRAAD EEGPTGLERK YLYWGNRIDC
101: PGKHCNSCAG LGHQESSLRC ALEEALFLHR CNSIASFHFC NCYFQLPLSD LATETCFGVH LSVKFTSFFM FKLMIL
101: PGKHCNSCAG LGHQESSLRC ALEEALFLHR CNSIASFHFC NCYFQLPLSD LATETCFGVH LSVKFTSFFM FKLMIL
001: MATMSKPHKL KATPGSQRLV LLCIVAVAFL LLFTSVISTG GLALPYRTTL IGYFVRSTRN KTQHSLSDKY LYWGNRIDCP GKNCETCAGL GHQESSLRCA
101: LEEAMFLNRT FVMPSRMCIN PIHNKKGILN RSNNETREES WEVSSCAMES LYDIDLISEK IPVILDDSET WHIMLSTSMK LKERGSAHVY GANRHELNDS
201: SDFTNLLLIN RTASPLAWFV ECKDRGNRSD VMLPYSFLQT MAASRLRDAA EKIKAKLGDY DAIHVRRGDK LKTRKDRFRV ERSQFPHLDR DTRPEFIIGR
301: IQKQIPPGRT LFIGSNERTP DFFSPLAIRY KVAYSSNFSE ILDPIIENNY QLFMVERLIM MGAKTFFKTF REYETDLTLT DDPKKNKNWE IPVYTMDEGK
401: EAAS
101: LEEAMFLNRT FVMPSRMCIN PIHNKKGILN RSNNETREES WEVSSCAMES LYDIDLISEK IPVILDDSET WHIMLSTSMK LKERGSAHVY GANRHELNDS
201: SDFTNLLLIN RTASPLAWFV ECKDRGNRSD VMLPYSFLQT MAASRLRDAA EKIKAKLGDY DAIHVRRGDK LKTRKDRFRV ERSQFPHLDR DTRPEFIIGR
301: IQKQIPPGRT LFIGSNERTP DFFSPLAIRY KVAYSSNFSE ILDPIIENNY QLFMVERLIM MGAKTFFKTF REYETDLTLT DDPKKNKNWE IPVYTMDEGK
401: EAAS
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56750.1); Has 57 Blast hit /.../7 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). [Source:TAIR;Acc:AT2G41150]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.