Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400048710 | Potato | extracellular | 9.09 | 3.43 |
Zm00001d006931_P002 | Maize | plasma membrane | 18.18 | 3.02 |
Zm00001d019764_P001 | Maize | golgi, mitochondrion | 19.7 | 2.85 |
GSMUA_Achr5P27530_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 7.58 | 2.84 |
Zm00001d016377_P001 | Maize | nucleus | 6.06 | 2.78 |
PGSC0003DMT400003520 | Potato | mitochondrion | 6.06 | 2.44 |
Zm00001d010457_P001 | Maize | cytosol | 4.55 | 2.36 |
Zm00001d029266_P002 | Maize | mitochondrion | 13.64 | 1.9 |
Zm00001d022247_P001 | Maize | plasma membrane | 16.67 | 1.89 |
Zm00001d032819_P001 | Maize | plasma membrane | 18.18 | 1.88 |
Zm00001d022294_P002 | Maize | plastid | 4.55 | 1.79 |
Zm00001d004819_P001 | Maize | mitochondrion | 7.58 | 1.75 |
Protein Annotations
EnsemblPlants:Zm00001d006021_P001 | EnsemblPlants:Zm00001d006021_T001 | EnsemblPlantsGene:Zm00001d006021 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
ProteinID:ONM22547.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0008452173 | UniProt:A0A1D6ES34 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:+:195424264..195424464
Molecular Weight (calculated)
6630.8 Da
IEP (calculated)
3.888
GRAVY (calculated)
0.365
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSSDPDDAP DGGEDSPLFR RSGGPSSGGT VGDVPVSQSL IKAASNVCFS LFVLAVLVVT VVAVTY
001: MKESDLTTEP IAQNLIKLIS NVCFSVFVFT VLIFTVIAVT YQPPDPWLES APALTKLLTE TENATFKIDG SILKTGEDLA SSPSSSPPSN STEQVTEATI
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
101: EKSEAKIGNM TVKNSIDCDE DLKIVNCSDP RVLVAVERFN LKVFKSIVFL EYETPVNGSK LDECDVSWRF RNKKEKSWRR YRDFRRFRFG FGENCTYKVF
201: HTSGWHSGVN ARRPRISRPS SSRGARGGDS EINDTIPTLG SQTSFRRGKY LYYSRGGDYC KGMNQYMWSF LCGLGEAMYL NRTFVMDLSL CLSSSYSSKG
301: KDEEGKDFRY YFDFEHLKET ASIVEEGEFL RDWKKWNRLH KRKVPVRKVK THRVSPLQLS KDKSTIIWRQ FDTPEPENYW YRVCEGQASK YVERPWHALW
401: KSKRLMNIVS EISGKMDWDF DAVHVVRGEK AKNKKLWPHL DADTWPDAIL TKLKGLVQVW RNLYVATNEP FYNYFDKLRS QYKVHLLDDY SYLWGNKSEW
501: YNETSLLNNG KPVEFDGYMR VAVDTEVFYR GKTRVETFYN LTTDCKDGIN TC
Arabidopsis Description
SUB1SUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWI5]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.