Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006021_P001 | Maize | cytosol | 3.43 | 9.09 |
| PGSC0003DMT400082037 | Potato | endoplasmic reticulum, plasma membrane | 16.57 | 5.24 |
| PGSC0003DMT400074186 | Potato | cytosol, golgi, mitochondrion, plasma membrane | 16.0 | 4.86 |
| PGSC0003DMT400044798 | Potato | golgi, mitochondrion | 14.29 | 4.3 |
| PGSC0003DMT400003520 | Potato | mitochondrion | 4.0 | 4.27 |
| PGSC0003DMT400021597 | Potato | golgi | 9.71 | 4.22 |
| GSMUA_Achr5P27530_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 3.43 | 3.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048710 | EnsemblPlantsGene:PGSC0003DMG400018929 | PANTHER:PTHR31469 | PANTHER:PTHR31469:SF2 | PGSC:PGSC0003DMG400018929 | TMHMM:TMhelix |
| UniParc:UPI0002957D5E | UniProt:M1BMS7 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018929]
Coordinates
chr1:+:42145952..42148711
Molecular Weight (calculated)
19443.4 Da
IEP (calculated)
4.474
GRAVY (calculated)
0.136
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGLSRWCCV LFVPVELMGD WLGCGFIIFN KFRFRSRPGQ MTEYTSSTTG LTFILLVSPF SPELPEFGGL LPFVPENPLF HPSAKITNFL TSKSNATFRA
101: DDSVVRTGED FLGVNQTTFM TFINLKDVDV PENNLDCSGK IDDPVDCTDP DVFHLLMKAA INWYRVILEG VGSLG
101: DDSVVRTGED FLGVNQTTFM TFINLKDVDV PENNLDCSGK IDDPVDCTDP DVFHLLMKAA INWYRVILEG VGSLG
001: MSGRSAFSRT GGFRPENLGQ NAVSLIGSIG FSVLVIGVVV FTIIAATYEP EDPLFHPSDK ITTFLTSNSN ATLKSDDSIV KTGEDFMAAN QTAFGGFINI
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S
101: ADVETSENDS DGNQLDCDTN IPIDCKDPEV FHLMMKATME KFKDSHFYKF GKPVIVEGSS SSCDMAWRYR PKDGKAAAFY KDYRRFVIEK SGNCSVSVMG
201: IGEYHSGVNA RKRKRPGFRN SSGGKVDDFA LPVVGEAVND SLPVVESENV FKEGHYLVYS GGGDRCKSMN HFLWSFLCAL GEAQYLNRTL VMDLTLCLSS
301: VYTLSGQNEE GKDFRFYFDF EHLKEAASML DQVQFWADWG KWYKKNGLKL HLVEDFRVTP MKLVDVKDTL IMRKFGTVEP DNYWYRVCEG ETESVVQRPW
401: NLLWKSKRLM EIVSAIASRL NWDYDAIHIE RGDKARNKEV WPNLEKDTSP SSILSTLQDK IEQGRNLYIA TNEPELSFFN PLKDKYKPHF LDEFKDLWDE
501: SSEWYSETTK LNGGNPVEFD GYMRASVDTE VFLRGKKQIE TFNDLTNDCR DGIGTCNVAA S
Arabidopsis Description
At4g12700 [Source:UniProtKB/TrEMBL;Acc:Q9SU16]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.