Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94743 | Soybean | plastid | 38.46 | 34.03 |
| VIT_14s0068g00800.t01 | Wine grape | plastid | 42.6 | 26.87 |
| KRH06786 | Soybean | plastid | 38.46 | 24.53 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 37.28 | 23.08 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 36.69 | 22.71 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 36.09 | 22.34 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 35.5 | 21.51 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:GSMUA_Achr7G22600_001 | EnsemblPlants:GSMUA_Achr7P22600_001 | EnsemblPlants:GSMUA_Achr7T22600_001 | InterPro:IPR000727 |
| UniProt:M0TJU6 | PFAM:PF05739 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 |
| InterPro:SNARE | SUPFAM:SSF47661 | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000296C3EF | SEG:seg |
Description
Putative Syntaxin, N-terminal [Source:GMGC_GENE;Acc:GSMUA_Achr7G22600_001]
Coordinates
chr7:+:25054715..25056477
Molecular Weight (calculated)
19377.0 Da
IEP (calculated)
4.561
GRAVY (calculated)
-0.371
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MKREDARNAS PSRPWPLTSS PGEETAAGED AGDDDDRLLL WEQTRQELLS LENETAFNEA IIEEREEDIK EIHYDVQQIH EIYQDLAVLL HDQPISIDNI
101: DKRIEESAAS TGRAKEQLYK ASKCSRSRSS WVCWVLIILV LVLVILLLVL ILHRLLARHD NPVQSLVKQ
101: DKRIEESAAS TGRAKEQLYK ASKCSRSRSS WVCWVLIILV LVLVILLLVL ILHRLLARHD NPVQSLVKQ
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.