Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g091300.2.1 | Tomato | nucleus | 97.7 | 97.14 |
| VIT_15s0045g00060.t01 | Wine grape | cytosol | 62.64 | 71.71 |
| VIT_15s0048g00970.t01 | Wine grape | cytosol | 72.22 | 61.0 |
| KRH65274 | Soybean | cytosol | 69.92 | 54.56 |
| KRH76261 | Soybean | nucleus | 69.35 | 54.03 |
| CDY38041 | Canola | nucleus | 68.58 | 53.04 |
| AT1G02010.4 | Thale cress | cytosol, nucleus, peroxisome | 70.69 | 52.49 |
| GSMUA_Achr9P24460_001 | Banana | cytosol | 65.71 | 51.73 |
| Bra032660.1-P | Field mustard | cytosol | 58.81 | 51.51 |
| KXG19223 | Sorghum | cytosol | 61.88 | 49.39 |
| TraesCS3D01G542100.1 | Wheat | cytosol | 59.96 | 47.64 |
| TraesCS3A01G538700.1 | Wheat | cytosol | 59.96 | 47.64 |
| TraesCS3B01G607200.1 | Wheat | cytosol | 59.96 | 47.64 |
| Zm00001d045434_P004 | Maize | cytosol | 61.49 | 46.59 |
| HORVU3Hr1G117280.1 | Barley | cytosol | 60.15 | 46.31 |
| Os06t0135900-01 | Rice | plasma membrane | 45.98 | 45.98 |
| PGSC0003DMT400038058 | Potato | cytosol | 16.86 | 14.19 |
| PGSC0003DMT400043339 | Potato | cytosol | 5.94 | 9.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400020076 | EnsemblPlantsGene:PGSC0003DMG400007771 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF59 | PFAM:PF00995 |
| PGSC:PGSC0003DMG400007771 | PIRSF:PIRSF005715 | SUPFAM:SSF56815 | UniParc:UPI00029533EE | UniProt:M1ACZ0 | MapMan:13.4.2.4 |
Description
Protein transport Sec1a [Source:PGSC_GENE;Acc:PGSC0003DMG400007771]
Coordinates
chr1:+:70632834..70639345
Molecular Weight (calculated)
59070.9 Da
IEP (calculated)
7.925
GRAVY (calculated)
-0.669
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEYFPIDS QGFVTDHERA LGELFGESAQ NSRRAEASLN VMASRISTVF ASLKEFPFVR YRASKGQDGS TATNFRELVA GKLATAIWNN ITTYKSSIPN
101: YPQKETCELL ILDRSVDQIA PVIHEWTYDA MCHDLLDMDG NKYVHEVPSK TGGSPEKKEV LLEDQDPVWL ELRHTHIADA SERLHDRFTN FVSKNKAAQM
201: EQRDGSELST RDLQKMVQAL PQYNEQKERL STHVEIAGEL NKIIRDTGLR ELGQLEQDLV FGDAGTKEVI HYLRSKQDTS GENKLRLMMI YASVYPEKFE
301: GDKAAKLMQL AKLSPEDMKA VKNMRMLEGS EKRKPSGSFS LKFDSQKKGN AARKDRTGEE ETWQLFRFYP VIEELVDKMC KGDLSKDDYQ CMNSSQTAPR
401: GVNGSSARNV PPKATTESTN PRSVRSRRTP NWARSRTSDD GYSSDSNLRS FSTDFKNMGQ RIFVFIIGGA TRSELRVCHK LTAKLRREVV LGTTSLDDPP
501: QYITKLKLLS EKEIAVDPGL GI
101: YPQKETCELL ILDRSVDQIA PVIHEWTYDA MCHDLLDMDG NKYVHEVPSK TGGSPEKKEV LLEDQDPVWL ELRHTHIADA SERLHDRFTN FVSKNKAAQM
201: EQRDGSELST RDLQKMVQAL PQYNEQKERL STHVEIAGEL NKIIRDTGLR ELGQLEQDLV FGDAGTKEVI HYLRSKQDTS GENKLRLMMI YASVYPEKFE
301: GDKAAKLMQL AKLSPEDMKA VKNMRMLEGS EKRKPSGSFS LKFDSQKKGN AARKDRTGEE ETWQLFRFYP VIEELVDKMC KGDLSKDDYQ CMNSSQTAPR
401: GVNGSSARNV PPKATTESTN PRSVRSRRTP NWARSRTSDD GYSSDSNLRS FSTDFKNMGQ RIFVFIIGGA TRSELRVCHK LTAKLRREVV LGTTSLDDPP
501: QYITKLKLLS EKEIAVDPGL GI
001: MLGSTKTGDS KAWKILIMDR VTVKVMSQSC KMADITDQGI SLVEELFKRR EPMPGMDAIY FIQPSKENIV MFLSDMSGRE PLYRKAFIFF SSTIPKELVN
101: HIKSDSSVLP RIGALREMNM EYFPIDNQGF LTDHEQALET LYAEDAENSR HFHICLNIMA TRIATVFASL KELPFVRYRA AKSTASRDLV PSKLAAAIWD
201: CISKYKAIPN FPQTETCELL IVDRSVDQIA PIIHEWTYDA MCHDLLDMEG NKHVIEVPSK TGGPPEKKEI VLEDHDPVWL ELRHTHIADA SERLHEKMTN
301: FASKNKAAQM RSRDGSELST RDLQKIVQAL PQYGEQVDKL STHVELAGKI NRIIRDTGLR DLGQLEQDLV FGDAGAKDVI NFLRTNQDTN PENKLRLLMI
401: YATVYPEKFE GDKGVKLMQL ARLSPVDMKV ISNMQLIAGS PENKAKSGSF SLKFDAGKTK QANRKDRSGE EETWQLFRFY PMIEELLEKL VKGDLSKSDY
501: LCMNQSSHKE ESEARTGSVR KSSAPTAVPE RKATPHSMRS RRTATWARPH SSDDGYSSDS VLKSASTEFK KLGQRIFVFI IGGATRSELR VCHKLTSSLR
601: REVVLGSTSF DDPPQYITKL KLLSEKDIQG APAQPFKPQY W
101: HIKSDSSVLP RIGALREMNM EYFPIDNQGF LTDHEQALET LYAEDAENSR HFHICLNIMA TRIATVFASL KELPFVRYRA AKSTASRDLV PSKLAAAIWD
201: CISKYKAIPN FPQTETCELL IVDRSVDQIA PIIHEWTYDA MCHDLLDMEG NKHVIEVPSK TGGPPEKKEI VLEDHDPVWL ELRHTHIADA SERLHEKMTN
301: FASKNKAAQM RSRDGSELST RDLQKIVQAL PQYGEQVDKL STHVELAGKI NRIIRDTGLR DLGQLEQDLV FGDAGAKDVI NFLRTNQDTN PENKLRLLMI
401: YATVYPEKFE GDKGVKLMQL ARLSPVDMKV ISNMQLIAGS PENKAKSGSF SLKFDAGKTK QANRKDRSGE EETWQLFRFY PMIEELLEKL VKGDLSKSDY
501: LCMNQSSHKE ESEARTGSVR KSSAPTAVPE RKATPHSMRS RRTATWARPH SSDDGYSSDS VLKSASTEFK KLGQRIFVFI IGGATRSELR VCHKLTSSLR
601: REVVLGSTSF DDPPQYITKL KLLSEKDIQG APAQPFKPQY W
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.