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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • peroxisome 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome
BaCelLo:cytosol
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
 mitochondrion: 14983062
cytosol: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
msms PMID: 14983062 doi
Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 PGSC0003DMT400051417 AT1G14830.1 21798944
AT5G65940.1 PGSC0003DMT400020128 AT2G42790.1 21798944
AT5G65940.1 PGSC0003DMT400044692 AT2G42790.1 21798944
AT5G65940.1 PGSC0003DMT400023026 AT3G12110.1 21798944
AT5G65940.1 PGSC0003DMT400049429 AT3G12110.1 21798944
AT5G65940.1 PGSC0003DMT400044886 AT5G56630.1 21798944
AT5G65940.1 PGSC0003DMT400070848 AT5G56630.1 21798944
AT5G65940.1 PGSC0003DMT400095815 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 66.93 96.62
Solyc01g094090.2.1 Tomato cytosol 77.6 90.58
PGSC0003DMT400066414 Potato cytosol 35.94 80.7
PGSC0003DMT400066411 Potato nucleus 29.17 76.71
PGSC0003DMT400004521 Potato cytosol 45.83 75.21
PGSC0003DMT400004567 Potato extracellular 25.52 74.24
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 13.02 73.53
PGSC0003DMT400066419 Potato cytosol 43.49 69.58
PGSC0003DMT400066409 Potato cytosol 24.22 66.91
CDY57769 Canola peroxisome 63.02 64.88
AT5G65940.1 Thale cress peroxisome 63.54 64.55
PGSC0003DMT400004585 Potato extracellular 44.79 64.42
Bra031802.1-P Field mustard cytosol 63.02 64.36
CDY55104 Canola cytosol 63.02 64.36
AT2G30660.1 Thale cress peroxisome 62.5 63.49
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 60.68 62.97
AT2G30650.1 Thale cress peroxisome 61.98 62.96
KRH07311 Soybean nucleus 63.02 62.53
Bra018395.1-P Field mustard cytosol 59.38 61.13
Bra018392.1-P Field mustard cytosol 58.33 60.22
TraesCS1D01G194800.2 Wheat cytosol 59.38 59.84
CDY31775 Canola peroxisome 59.64 59.79
CDX97894 Canola peroxisome 59.9 59.28
GSMUA_Achr5P13870_001 Banana cytosol 60.94 59.24
EER91893 Sorghum cytosol 59.38 59.07
TraesCS1B01G206000.1 Wheat cytosol 58.59 59.06
GSMUA_Achr5P13900_001 Banana cytosol 47.92 58.97
CDY45442 Canola mitochondrion 50.52 58.61
CDY62818 Canola peroxisome 61.2 58.6
TraesCS1A01G190800.1 Wheat plastid 59.11 57.91
Bra039968.1-P Field mustard peroxisome 60.16 57.89
CDY31769 Canola peroxisome 60.42 57.86
GSMUA_Achr8P14800_001 Banana cytosol 59.11 57.18
Zm00001d023779_P001 Maize extracellular 57.29 56.99
CDY45439 Canola plastid 58.59 56.96
Bra039975.1-P Field mustard peroxisome 56.51 56.36
Zm00001d007726_P001 Maize peroxisome 35.68 55.92
Zm00001d021132_P004 Maize extracellular 58.59 55.69
Zm00001d007746_P002 Maize peroxisome 27.34 55.26
KXG29172 Sorghum peroxisome 54.43 54.01
HORVU1Hr1G049960.6 Barley mitochondrion 59.11 53.79
OQU84058 Sorghum mitochondrion 57.29 53.66
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 20.57 53.02
Zm00001d007740_P001 Maize peroxisome 45.83 46.68
PGSC0003DMT400054311 Potato cytosol 19.01 45.91
Zm00001d007732_P002 Maize extracellular 33.85 45.61
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 46.09 45.27
Os12t0264500-02 Rice endoplasmic reticulum 58.33 43.66
PGSC0003DMT400069137 Potato cytosol, mitochondrion 31.77 43.11
Zm00001d007728_P001 Maize cytosol 15.89 42.96
PGSC0003DMT400020300 Potato cytosol 42.71 42.71
GSMUA_Achr5P13890_001 Banana nucleus 17.71 42.5
PGSC0003DMT400079108 Potato cytosol 35.68 39.83
PGSC0003DMT400043000 Potato cytosol 20.05 39.49
PGSC0003DMT400041136 Potato cytosol 35.68 39.48
PGSC0003DMT400057075 Potato cytosol, plastid 39.58 38.0
PGSC0003DMT400065713 Potato cytosol, mitochondrion 22.14 35.42
Protein Annotations
EnsemblPlants:PGSC0003DMT400000054EnsemblPlantsGene:PGSC0003DMG400000017EntrezGene:102606353Gene3D:3.90.226.40GO:GO:0003674GO:GO:0003824
GO:GO:0003860GO:GO:0016787InterPro:ClpP/crotonase-like_dom_sfInterPro:HIBYL-CoA-Hncoils:CoilPANTHER:PTHR43176
PANTHER:PTHR43176:SF6PFAM:PF16113PGSC:PGSC0003DMG400000017RefSeq:XP_006339517.1SUPFAM:SSF52096UniParc:UPI000295B929
UniProt:M0ZG14MapMan:4.2.7.4MapMan:4.2.7.6.1:::
Description
Beta-hydroxyisobutyryl-CoA hydrolase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000017]
Coordinates
chr1:+:71688539..71694700
Molecular Weight (calculated)
43477.5 Da
IEP (calculated)
6.870
GRAVY (calculated)
-0.214
Length
384 amino acids
Sequence
(BLAST)
001: MAQTSSNNGE TDEVLVEERG SVRTFILNRP KQLNALSFQM ISRLTELFYA SEEDSNVKMI ILKGHGRAFC AGGDLSTPFH IIRQGNWQLG ANYLREQYTL
101: IYMIATYRKP QVSILNGIVM GGGAGVSIHG RFRVATEKSV FAMPETAMGL FPDVGSSYFL SRLPGFFGEY AGLTGSRFDG AEMLACGLAT HFVSSDKLPL
201: LEQELVKVNT SDPDAISAII SRFSHIPKLK EGSPYHKMKI IDRCFSRRTI EEIISTLENE ALDKKEEDWI SSTIQLLKKA SPTSLKISLR LIREGRLQGV
301: DICLVCEYRI FCHVLRGEFN KDILEGFRAI LIEKDRNPKW DPSRVELVRD IDIDRYYTKI DDEDWEDLKL PPRSYLPPYA IAKL
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.