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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • peroxisome 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, peroxisome
BaCelLo:cytosol
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER88427
EES03295
EES04804
EES12364
KXG22639
KXG29961
KXG37727
OQU78332
OQU87495
OQU89852

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 KXG37727 AT1G14830.1 21798944
AT5G65940.1 EES12364 AT2G42490.1 21798944
AT5G65940.1 OQU89852 AT2G42490.1 21798944
AT5G65940.1 EES04804 AT2G42790.1 21798944
AT5G65940.1 EER88427 AT4G01090.1 21798944
AT5G65940.1 EES03295 AT4G01090.1 21798944
AT5G65940.1 KXG22639 AT4G01090.1 21798944
AT5G65940.1 KXG29961 AT4G01090.1 21798944
AT5G65940.1 OQU78332 AT5G56630.1 21798944
AT5G65940.1 OQU87495 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d021132_P004 Maize extracellular 95.85 91.58
KXG29172 Sorghum peroxisome 80.57 80.36
TraesCS1B01G206000.1 Wheat cytosol 79.27 80.31
TraesCS1D01G194800.2 Wheat cytosol 79.02 80.05
TraesCS1A01G190800.1 Wheat plastid 79.79 78.57
OQU84058 Sorghum mitochondrion 82.9 78.05
HORVU1Hr1G049960.6 Barley mitochondrion 79.02 72.27
CDY57769 Canola peroxisome 63.47 65.68
GSMUA_Achr5P13900_001 Banana cytosol 52.59 65.06
Bra031802.1-P Field mustard cytosol 63.21 64.89
CDY55104 Canola cytosol 63.21 64.89
AT2G30660.1 Thale cress peroxisome 63.21 64.55
AT5G65940.1 Thale cress peroxisome 63.21 64.55
Solyc01g080930.2.1 Tomato cytosol 63.99 64.49
VIT_15s0045g01170.t01 Wine grape cytosol 24.35 64.38
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 61.14 63.78
PGSC0003DMT400066411 Potato nucleus 24.09 63.7
KRH07311 Soybean nucleus 63.47 63.31
GSMUA_Achr8P14800_001 Banana cytosol 64.77 62.97
PGSC0003DMT400004567 Potato extracellular 21.5 62.88
AT2G30650.1 Thale cress peroxisome 61.4 62.7
PGSC0003DMT400066414 Potato cytosol 27.72 62.57
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 61.4 62.53
GSMUA_Achr5P13870_001 Banana cytosol 63.99 62.53
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 10.88 61.76
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 23.83 61.74
Os12t0264500-02 Rice endoplasmic reticulum 81.87 61.6
CDY31775 Canola peroxisome 60.88 61.36
CDX97894 Canola peroxisome 60.36 60.05
Bra018392.1-P Field mustard cytosol 57.77 59.95
Solyc01g094090.2.1 Tomato cytosol 51.04 59.88
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 41.19 59.77
PGSC0003DMT400066409 Potato cytosol 21.5 59.71
PGSC0003DMT400000054 Potato cytosol 59.07 59.38
Bra018395.1-P Field mustard cytosol 56.48 58.45
CDY62818 Canola peroxisome 60.62 58.35
CDY45442 Canola mitochondrion 50.0 58.31
Bra039968.1-P Field mustard peroxisome 59.84 57.89
CDY31769 Canola peroxisome 60.1 57.86
Bra039975.1-P Field mustard peroxisome 57.25 57.4
PGSC0003DMT400004521 Potato cytosol 34.72 57.27
PGSC0003DMT400004585 Potato extracellular 38.6 55.81
CDY45439 Canola plastid 56.74 55.44
PGSC0003DMT400066419 Potato cytosol 33.42 53.75
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 48.7 48.08
GSMUA_Achr5P13890_001 Banana nucleus 17.62 42.5
EER91964 Sorghum mitochondrion 44.04 41.87
EES03617 Sorghum cytosol 40.67 40.99
Solyc01g108790.1.1 Tomato nucleus 17.62 38.64
KXG20277 Sorghum plastid 31.35 28.34
Protein Annotations
EnsemblPlants:EER91893EnsemblPlantsGene:SORBI_3001G290000EntrezGene:8055611Gene3D:3.90.226.40GO:GO:0003674GO:GO:0003824
GO:GO:0003860GO:GO:0016787InterPro:ClpP/crotonase-like_dom_sfInterPro:HIBYL-CoA-Hncoils:CoilPANTHER:PTHR43176
PFAM:PF16113ProteinID:EER91893ProteinID:EER91893.1RefSeq:XP_002464895.1SEG:segSUPFAM:SSF52096
unigene:Sbi.14493UniParc:UPI0001A823DBUniProt:C5WRC8MapMan:4.2.7.4MapMan:4.2.7.6.1:
Description
hypothetical protein
Coordinates
chr1:+:56681085..56686103
Molecular Weight (calculated)
42971.9 Da
IEP (calculated)
7.748
GRAVY (calculated)
-0.137
Length
386 amino acids
Sequence
(BLAST)
001: MASMPPPSAA GADSDQILVE VNGFTRTLIL NRPKQLNALS STMIMGLLRC FTAYEKDDGV KLLIMKGKGR AFCAGGDVAG VVRSIHKDSW KYGADFFRNE
101: FLLNYIIATY TKPQVSLLTG IVMGGGAGVS LHGRFRVATD NTVFAMPETA LGLFPDIGAS YFLSRLPGFY GEYVALAGAR LDGVEMLACG LATHFVHSNR
201: LLLLEESLKK VDTSNTFAVC GIIDQFAQQP SLKESSSLNR LEIINKCFSK RTVEEIISAL ELEATNLADE WVATTIQSLK KASPTSLKIS LRSIREGRTQ
301: TVGECLQREY RMVCHVMRGD FSRDFFEGCR AILIDKDRNP KWMPPRLEQV HDEAVEQYFS RIDDPQWEDL NLPPRRSHGR NIESKL
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.