Factsheet for Solyc01g108800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
peroxisome 4
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005310.2.1
Solyc04g072580.1.1
Solyc05g013440.2.1
Solyc07g045160.2.1
Solyc07g055840.2.1
Solyc09g010750.1.1
Solyc10g086460.1.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	Solyc01g005310.2.1	AT1G14830.1	21798944
AT5G65940.1	Solyc05g013440.2.1	AT2G42490.1	21798944
AT5G65940.1	Solyc07g055840.2.1	AT2G42790.1	21798944
AT5G65940.1	Solyc12g011000.1.1	AT2G42790.1	21798944
AT5G65940.1	Solyc09g010750.1.1	AT3G12110.1	21798944
AT5G65940.1	Solyc10g086460.1.1	AT3G12110.1	21798944
AT5G65940.1	Solyc04g072580.1.1	AT5G56630.1	21798944
AT5G65940.1	Solyc07g045160.2.1	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080930.2.1	Tomato	cytosol	79.95	79.11
Solyc01g094090.2.1	Tomato	cytosol	67.55	77.81
PGSC0003DMT400066419	Potato	cytosol	47.76	75.42
PGSC0003DMT400066409	Potato	cytosol	27.18	74.1
CDY57769	Canola	peroxisome	64.91	65.95
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	64.38	65.95
Bra031802.1-P	Field mustard	cytosol	64.91	65.43
CDY55104	Canola	cytosol	64.91	65.43
AT2G30660.1	Thale cress	peroxisome	65.17	65.34
AT5G65940.1	Thale cress	peroxisome	65.17	65.34
KRH07311	Soybean	nucleus	65.17	63.82
Bra018395.1-P	Field mustard	cytosol	62.53	63.54
Bra018392.1-P	Field mustard	cytosol	61.74	62.9
AT2G30650.1	Thale cress	peroxisome	62.53	62.7
CDY45442	Canola	mitochondrion	54.35	62.24
TraesCS1D01G194800.2	Wheat	cytosol	62.53	62.2
CDY31775	Canola	peroxisome	62.53	61.88
TraesCS1B01G206000.1	Wheat	cytosol	62.01	61.68
CDX97894	Canola	peroxisome	63.06	61.6
EER91893	Sorghum	cytosol	62.53	61.4
Zm00001d007726_P001	Maize	peroxisome	39.58	61.22
CDY62818	Canola	peroxisome	64.64	61.1
Zm00001d007746_P002	Maize	peroxisome	30.61	61.05
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	14.25	60.67
TraesCS1A01G190800.1	Wheat	plastid	62.53	60.46
Bra039968.1-P	Field mustard	peroxisome	63.59	60.4
CDY31769	Canola	peroxisome	63.85	60.35
CDY45439	Canola	plastid	62.27	59.75
GSMUA_Achr5P13900_001	Banana	cytosol	48.55	58.97
GSMUA_Achr8P14800_001	Banana	cytosol	61.74	58.94
Bra039975.1-P	Field mustard	peroxisome	59.37	58.44
Zm00001d021132_P004	Maize	extracellular	61.74	57.92
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	22.69	57.72
Zm00001d023779_P001	Maize	extracellular	58.58	57.51
GSMUA_Achr5P13870_001	Banana	cytosol	59.89	57.47
KXG29172	Sorghum	peroxisome	58.05	56.85
HORVU1Hr1G049960.6	Barley	mitochondrion	62.8	56.4
OQU84058	Sorghum	mitochondrion	60.42	55.85
Solyc05g032680.2.1	Tomato	mitochondrion	14.51	48.67
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	50.13	48.59
Zm00001d007732_P002	Maize	extracellular	36.41	48.42
Zm00001d007740_P001	Maize	peroxisome	48.02	48.28
Solyc07g043690.1.1	Tomato	cytosol	24.54	48.19
Os12t0264500-02	Rice	endoplasmic reticulum	62.27	46.0
Solyc01g108790.1.1	Tomato	nucleus	21.11	45.45
Solyc01g090700.2.1	Tomato	mitochondrion	44.85	42.08
Zm00001d007728_P001	Maize	cytosol	15.57	41.55
GSMUA_Achr5P13890_001	Banana	nucleus	17.41	41.25
Solyc12g011160.1.1	Tomato	cytosol	41.69	41.15
Solyc07g044710.1.1	Tomato	plastid	40.63	39.09
Solyc07g043680.2.1	Tomato	cytosol	40.37	38.44
Solyc06g054520.1.1	Tomato	cytosol	41.69	38.35
Solyc10g085630.1.1	Tomato	mitochondrion	41.16	38.05
Solyc07g044720.1.1	Tomato	plastid	41.16	37.05
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	41.69	37.0
Solyc07g044740.1.1	Tomato	cytosol	11.08	32.31
Solyc05g018410.1.1	Tomato	plastid	24.8	31.33
Solyc07g022880.2.1	Tomato	cytosol	11.61	30.56

Protein Annotations

EnsemblPlants:Solyc01g108800.2.1	EnsemblPlantsGene:Solyc01g108800.2	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	PFAM:PF16113
SEG:seg	SUPFAM:SSF52096	UniParc:UPI000276860D	UniProt:K4B395	MapMan:4.2.7.4	MapMan:4.2.7.6.1

Description

No Description!

Coordinates

chr1:+:95980975..95988841

Molecular Weight (calculated)

42368.9 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.206

Length

379 amino acids

Sequence
(BLAST)

001: MASSNNGGTN EILVEETGSV RTFILNRPKM LNALSSQMIH RLTELFYASE EDPNVKMIIL KGQGRAFCVG GDLSLILPSL RNWKIGANFF LKQYTLNYVM
101: ATYSKTQVSI LNGIVMGGGA GASIHGRFRV ATEKSVFAMP ETVLGHFPDV GASYFLSRLP GFFGEYAGLT GSRLDGAEML ACGLATHFVS SDKLPLLEQA
201: LVQVNSSDPD AISAIISCFS HTPNLKEESP YHKMKIINHC FSRRTIEEII STLESEALDK KDEWISSTIQ SLKKASPTSL KISLRSIREG RLQSVGSCLV
301: REYRMACHVF RGEFSKDLFE GHRAILIDRD RNPKWEPSKL ELIRDDDVDR YFSKVDDEDW EDLKLPPRSN LPQYAIAKL

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.