CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EES03295
EES04804
EES12364
KXG22639
KXG29961
KXG37727
OQU78332
OQU87495
OQU89852

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	KXG37727	AT1G14830.1	21798944
AT5G65940.1	EES12364	AT2G42490.1	21798944
AT5G65940.1	OQU89852	AT2G42490.1	21798944
AT5G65940.1	EES04804	AT2G42790.1	21798944
AT5G65940.1	EER88427	AT4G01090.1	21798944
AT5G65940.1	EES03295	AT4G01090.1	21798944
AT5G65940.1	KXG22639	AT4G01090.1	21798944
AT5G65940.1	KXG29961	AT4G01090.1	21798944
AT5G65940.1	OQU78332	AT5G56630.1	21798944
AT5G65940.1	OQU87495	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29172	Sorghum	peroxisome	79.51	84.24
Zm00001d007726_P001	Maize	peroxisome	49.76	83.27
EER91893	Sorghum	cytosol	78.05	82.9
Zm00001d007746_P002	Maize	peroxisome	37.07	80.0
TraesCS1D01G194800.2	Wheat	cytosol	69.27	74.54
TraesCS1B01G206000.1	Wheat	cytosol	69.02	74.28
TraesCS1A01G190800.1	Wheat	plastid	69.51	72.7
HORVU1Hr1G049960.6	Barley	mitochondrion	70.24	68.25
Zm00001d007740_P001	Maize	peroxisome	61.22	66.58
PGSC0003DMT400004567	Potato	extracellular	20.73	64.39
CDY57769	Canola	peroxisome	56.83	62.47
Solyc01g080930.2.1	Tomato	cytosol	58.29	62.4
PGSC0003DMT400066411	Potato	nucleus	21.95	61.64
AT5G65940.1	Thale cress	peroxisome	56.83	61.64
Bra031802.1-P	Field mustard	cytosol	56.1	61.17
CDY55104	Canola	cytosol	56.1	61.17
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	54.88	60.81
AT2G30650.1	Thale cress	peroxisome	55.85	60.58
AT2G30660.1	Thale cress	peroxisome	55.85	60.58
GSMUA_Achr5P13900_001	Banana	cytosol	46.1	60.58
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	55.85	60.42
KRH07311	Soybean	nucleus	56.59	59.95
PGSC0003DMT400066409	Potato	cytosol	20.24	59.71
PGSC0003DMT400066414	Potato	cytosol	24.88	59.65
Solyc01g094090.2.1	Tomato	cytosol	47.8	59.57
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	21.46	59.06
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	38.29	59.02
GSMUA_Achr5P13870_001	Banana	cytosol	56.83	58.99
Zm00001d007732_P002	Maize	extracellular	40.73	58.6
GSMUA_Achr8P14800_001	Banana	cytosol	56.59	58.44
VIT_15s0045g01170.t01	Wine grape	cytosol	20.49	57.53
Bra018392.1-P	Field mustard	cytosol	52.2	57.53
CDY31775	Canola	peroxisome	53.66	57.44
PGSC0003DMT400000054	Potato	cytosol	53.66	57.29
PGSC0003DMT400004521	Potato	cytosol	32.44	56.84
Os12t0264500-02	Rice	endoplasmic reticulum	70.98	56.73
CDY45442	Canola	mitochondrion	45.61	56.5
CDX97894	Canola	peroxisome	53.17	56.19
Bra018395.1-P	Field mustard	cytosol	50.98	56.03
CDY62818	Canola	peroxisome	54.15	55.36
Bra039968.1-P	Field mustard	peroxisome	53.66	55.14
CDY31769	Canola	peroxisome	53.9	55.11
PGSC0003DMT400004585	Potato	extracellular	35.85	55.06
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	9.02	54.41
Bra039975.1-P	Field mustard	peroxisome	50.98	54.29
PGSC0003DMT400066419	Potato	cytosol	31.71	54.17
Zm00001d007728_P001	Maize	cytosol	18.54	53.52
CDY45439	Canola	plastid	51.46	53.42
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	45.12	47.31
EER91964	Sorghum	mitochondrion	40.98	41.38
EES03617	Sorghum	cytosol	37.32	39.95
GSMUA_Achr5P13890_001	Banana	nucleus	15.37	39.38
Solyc01g108790.1.1	Tomato	nucleus	15.12	35.23
KXG20277	Sorghum	plastid	30.98	29.74

Protein Annotations

EnsemblPlants:OQU84058	EnsemblPlantsGene:SORBI_3005G222300	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PFAM:PF16113	ProteinID:OQU84058
ProteinID:OQU84058.1	SEG:seg	SUPFAM:SSF52096	UniParc:UPI000B8BAD40	UniProt:A0A1Z5RJZ9	MapMan:4.2.7.4
MapMan:4.2.7.6.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:70886686..70893616

Molecular Weight (calculated)

45429.1 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.101

Length

410 amino acids

Sequence
(BLAST)

001: MLLARVLSRL PARHLVQGTK RSMASLPAAG GAAGGDSSDQ LLVEADGSTR TLILNRPKKL NVLSSAMIKG LLRCFTVYEK DDRIKLLIMK GKGRAFCAGG
101: DITGCVRSIH NESWIGGADF FRHLYLLNYR IATYIKPQVS LLTGIVMGGG AGVSLHGRFR VVTDNTIFAM PETALGLFPD VGASYFLSRL PGFYGEYLGL
201: SGARLDGAEM LACGLATHFV PSNRLLLLEE SLKKVNTSNP FVVGSTIDQF AQQPSLKENS SLNRMEIINK CFSKRTVEEI ISSLEEVASD LADEWVAATI
301: QYLKKASPTS LKISLRSIRE GRTQTVGECL HREYRMVCHV MRGDFSPDFF EGCRAVLVDK DKNPMWMPPR LEQVHDKAVE EYFSRIDDPE WEDLNLPARR
401: SNGRIVESML

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.