CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31775	Canola	peroxisome	94.07	95.3
CDY62818	Canola	peroxisome	89.18	86.28
CDY31769	Canola	peroxisome	87.37	84.54
CDY57769	Canola	peroxisome	77.84	80.97
CDY55104	Canola	cytosol	78.35	80.85
AT2G30660.1	Thale cress	peroxisome	76.29	78.31
AT2G30650.1	Thale cress	peroxisome	74.48	76.45
CDY45442	Canola	mitochondrion	62.37	73.11
CDY45439	Canola	plastid	73.2	71.9
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	26.29	68.46
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	64.43	67.57
PGSC0003DMT400066411	Potato	nucleus	25.26	67.12
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	11.6	66.18
Solyc01g080930.2.1	Tomato	cytosol	64.69	65.54
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	61.6	63.06
PGSC0003DMT400004567	Potato	extracellular	21.39	62.88
KRH07311	Soybean	nucleus	62.37	62.53
PGSC0003DMT400066414	Potato	cytosol	27.32	61.99
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	41.49	60.53
EER91893	Sorghum	cytosol	60.05	60.36
PGSC0003DMT400000054	Potato	cytosol	59.28	59.9
TraesCS1B01G206000.1	Wheat	cytosol	58.76	59.84
PGSC0003DMT400066409	Potato	cytosol	21.39	59.71
TraesCS1D01G194800.2	Wheat	cytosol	58.51	59.58
GSMUA_Achr5P13900_001	Banana	cytosol	47.42	58.97
PGSC0003DMT400004521	Potato	cytosol	35.05	58.12
Solyc01g094090.2.1	Tomato	cytosol	49.23	58.05
PGSC0003DMT400066419	Potato	cytosol	35.82	57.92
TraesCS1A01G190800.1	Wheat	plastid	58.51	57.91
GSMUA_Achr5P13870_001	Banana	cytosol	58.76	57.72
Zm00001d021132_P004	Maize	extracellular	59.54	57.18
PGSC0003DMT400004585	Potato	extracellular	39.18	56.93
Zm00001d007726_P001	Maize	peroxisome	35.82	56.73
Zm00001d007746_P002	Maize	peroxisome	27.58	56.32
GSMUA_Achr8P14800_001	Banana	cytosol	57.47	56.17
Zm00001d023779_P001	Maize	extracellular	54.64	54.92
KXG29172	Sorghum	peroxisome	53.35	53.49
OQU84058	Sorghum	mitochondrion	56.19	53.17
HORVU1Hr1G049960.6	Barley	mitochondrion	57.47	52.84
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	48.97	48.59
Zm00001d007740_P001	Maize	peroxisome	45.36	46.68
Zm00001d007732_P002	Maize	extracellular	34.28	46.67
Zm00001d007728_P001	Maize	cytosol	16.24	44.37
Os12t0264500-02	Rice	endoplasmic reticulum	58.25	44.05
GSMUA_Achr5P13890_001	Banana	nucleus	17.53	42.5
CDX67831	Canola	mitochondrion	42.78	41.29
CDX98420	Canola	mitochondrion	42.78	41.29
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	23.45	40.44
CDX86518	Canola	cytosol	38.4	38.9
CDY23311	Canola	mitochondrion	40.72	38.54
CDY39880	Canola	mitochondrion	40.72	38.54
CDY15584	Canola	cytosol	37.11	37.99
Solyc01g108790.1.1	Tomato	nucleus	16.75	36.93
CDY72221	Canola	mitochondrion	19.33	36.06
CDY15581	Canola	cytosol	25.26	35.9
CDY15583	Canola	cytosol	32.99	34.69
CDY64934	Canola	cytosol	32.99	33.6
CDX86519	Canola	extracellular	16.24	31.82
CDY01126	Canola	mitochondrion, plastid	32.99	30.33
CDX93011	Canola	plastid	32.73	30.02
CDX94817	Canola	mitochondrion, plastid	32.22	29.55

Protein Annotations

EnsemblPlants:CDX97894	EnsemblPlantsGene:GSBRNA2T00105233001	Gene3D:3.90.226.40	GO:A0A078EAT8	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PFAM:PF16113
ProteinID:CDX97894	ProteinID:CDX97894.1	SUPFAM:SSF52096	UniParc:UPI0004EEB3DD	MapMan:4.2.7.4	MapMan:4.2.7.6.1

Description

BnaC04g40450D

Coordinates

chrLK031901:+:1261762..1264484

Molecular Weight (calculated)

43190.6 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.059

Length

388 amino acids

Sequence
(BLAST)

001: MALESHSQIL VEEKPSVRIL TLNRPKQLNA LSLNMVTRLL QLFLAYEVDP TVKLVILKGQ GRAFCAGGDV SAVVRDIGLG KWRRSADFMS LEYTLNYVMA
101: TYCKAQISIL NGIVMGGGAG VCVHGRFRIA TENTVFAMPE TALGLFPDVG ASYLLSRLSG FFGEYVGLTG ARLNGAEMLA CGLATHFVPS TRLTALQADL
201: CKVGSSDPVT FASTILDAYT QHPHPERQSA FYRQCSLVFF SLDVIDKCFS RRTIEEIMSA LEREATHKPD DWISATVEAL KKASPASLKI TLRSIREGRL
301: QGVGQCLIRE NRMVSHVMKG EISKDFVEGC RAILIDKDRN PKWEPRRLED MKDIMVDKYF KRVEEEDGWE DLKLPPRKHL PASAIAKL

Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)

001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL

Arabidopsis Description

CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.