CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67831	Canola	mitochondrion	98.01	98.01
CDY72221	Canola	mitochondrion	49.75	96.15
Bra003417.1-P	Field mustard	mitochondrion	95.52	96.0
AT3G60510.3	Thale cress	mitochondrion	87.56	82.63
CDY23311	Canola	mitochondrion	52.24	51.22
CDY39880	Canola	mitochondrion	51.74	50.73
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	17.91	48.32
CDY57769	Canola	peroxisome	44.28	47.72
CDY55104	Canola	cytosol	43.28	46.28
CDY45442	Canola	mitochondrion	36.32	44.11
CDY31769	Canola	peroxisome	43.03	43.14
CDX97894	Canola	peroxisome	41.29	42.78
CDY31775	Canola	peroxisome	40.55	42.56
CDY62818	Canola	peroxisome	42.04	42.14
CDY45439	Canola	plastid	39.55	40.25
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	21.14	37.78
CDX86518	Canola	cytosol	35.57	37.34
CDY15584	Canola	cytosol	35.07	37.2
CDY15581	Canola	cytosol	24.88	36.63
CDY15583	Canola	cytosol	31.59	34.42
CDX86519	Canola	extracellular	16.42	33.33
CDY64934	Canola	cytosol	30.85	32.55
CDY01126	Canola	mitochondrion, plastid	30.85	29.38
CDX93011	Canola	plastid	30.6	29.08
CDX94817	Canola	mitochondrion, plastid	30.35	28.84

Protein Annotations

EnsemblPlants:CDX98420	EnsemblPlantsGene:GSBRNA2T00106011001	Gene3D:3.90.226.10	GO:A0A078E8I7	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF4
PFAM:PF16113	ProteinID:CDX98420	ProteinID:CDX98420.1	SUPFAM:SSF52096	UniParc:UPI0004EEBEC1	MapMan:50.3.1

Description

BnaC06g17810D

Coordinates

chrLK031904:-:1246875..1249670

Molecular Weight (calculated)

44912.1 Da

IEP (calculated)

6.836

GRAVY (calculated)

-0.190

Length

402 amino acids

Sequence
(BLAST)

001: MHNANGFLTR VVRDKQLWRF GYRRSFCSLK VTPDDLDNQV LFEGSGCSRT AILNRPPALN ALTTHMGVRL HKLYKNWEED PNIGFVMMKG SGRAFCAGGD
101: IVSIYHLRKR GSPDAIREFF WTLYNFIYFL GTYLKPHVAI LNGVTMGGGA GVSIPGTFRV ATDRTIFATP ETVIGFHPDA GASFNLSHLP GRLGEYLGLT
201: GLKISGAEML ACGLATHYIS STEVPILEQQ LKKLLTDDPS VVEATLEKCA EAAHPEKTGV IRRIELLEKC FCHDTVEEII DSLEVEAGRT KDIWCTTTLR
301: RLKETSPLSL KVALRSVREG RFQTLDQCLI REYRMSLQGT IGNFSGNFCE GVRARLIDKD DAPKWDPPTL EKVTEDMVDD YFSSLTPSEP DLDLPIKLRE
401: SI

Best Arabidopsis Sequence Match ( AT3G60510.1 )
(BLAST)

001: MHNAKGLLGR IVRDKLWRFG YRRSLCSLKL TSEDLDYQVL VEGSGCSRTA ILNRPPALNA LTTHMGYRLQ KLYKNWEEDP NIGFVMMKGS GRAFCAGGDI
101: VSLYHLRTRG SPDAIREFFS SLYSFIYLLG TYLKPHVAIL NGVTMGGGTG VSIPGTFRVA TDRTIFATPE TIIGFHPDAG ASFNLSHLPG RLGEYLGLTG
201: LKLSGAEMLA CGLATHYIRS EEVPVMEEQL KKLLTDDPSV VESCLEKCAE VAHPEKTGVI RRIDLLEKCF SHDTVEEIID SLEIEASRRK DTWCITTLRR
301: LKESSPLSLK VALRSIREGR LQTLDQCLIR EYRMSLQGLI GPMSGNFCEG VRARLIDKDE APKWDPPSLE KVSEDMVDDY FCALTPTEPD LDLPVKLRES
401: I

Arabidopsis Description

ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Source:UniProtKB/TrEMBL;Acc:F4JBV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.