CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15584	Canola	cytosol	94.52	95.51
AT1G06550.1	Thale cress	cytosol	88.77	87.86
CDY15583	Canola	cytosol	76.76	79.67
CDY15581	Canola	cytosol	56.4	79.12
CDY49269	Canola	extracellular, mitochondrion, nucleus, plastid	45.69	77.78
VIT_12s0028g00590.t01	Wine grape	cytosol	73.37	72.24
Solyc12g011160.1.1	Tomato	cytosol	72.32	72.14
CDX86519	Canola	extracellular	37.08	71.72
PGSC0003DMT400020300	Potato	cytosol	71.8	71.61
KRG98957	Soybean	nucleus	69.71	66.58
KRH46020	Soybean	vacuole	69.19	66.58
EES03617	Sorghum	cytosol	65.54	65.54
TraesCS3D01G290900.1	Wheat	cytosol	56.92	65.47
TraesCS3B01G325800.1	Wheat	cytosol	65.54	65.19
TraesCS3A01G291100.1	Wheat	cytosol	65.54	65.19
Zm00001d043490_P001	Maize	cytosol, extracellular	65.27	65.1
Os01t0752200-01	Rice	plasma membrane	66.06	65.04
HORVU3Hr1G072100.2	Barley	cytosol	65.01	63.85
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	46.74	63.25
Solyc07g043690.1.1	Tomato	cytosol	31.59	62.69
PGSC0003DMT400079108	Potato	cytosol	55.87	62.21
Solyc06g054520.1.1	Tomato	cytosol	64.75	60.19
Solyc07g044710.1.1	Tomato	plastid	61.1	59.39
PGSC0003DMT400041136	Potato	cytosol	53.0	58.5
Solyc07g043680.2.1	Tomato	cytosol	59.01	56.78
Solyc07g044720.1.1	Tomato	plastid	61.36	55.82
PGSC0003DMT400057075	Potato	cytosol, plastid	57.44	55.0
GSMUA_Achr9P06670_001	Banana	plastid	66.58	54.03
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	60.05	53.86
PGSC0003DMT400054311	Potato	cytosol	21.67	52.2
Solyc07g044740.1.1	Tomato	cytosol	17.23	50.77
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	31.59	50.42
CDY57769	Canola	peroxisome	40.99	42.09
CDY55104	Canola	cytosol	40.99	41.76
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	15.4	39.6
CDY31775	Canola	peroxisome	38.9	38.9
CDX97894	Canola	peroxisome	38.9	38.4
CDY45442	Canola	mitochondrion	32.9	38.07
CDY31769	Canola	peroxisome	39.69	37.91
CDY62818	Canola	peroxisome	38.9	37.16
CDY45439	Canola	plastid	37.86	36.71
CDY23311	Canola	mitochondrion	38.9	36.34
CDY39880	Canola	mitochondrion	38.64	36.1
CDX67831	Canola	mitochondrion	37.6	35.82
CDX98420	Canola	mitochondrion	37.34	35.57
CDY72221	Canola	mitochondrion	18.54	34.13
CDY64934	Canola	cytosol	33.68	33.86
CDX93011	Canola	plastid	34.73	31.44
CDX94817	Canola	mitochondrion, plastid	34.46	31.21
CDY01126	Canola	mitochondrion, plastid	33.42	30.33

Protein Annotations

EnsemblPlants:CDX86518	EnsemblPlantsGene:GSBRNA2T00145125001	Gene3D:3.90.226.40	GO:A0A078DGT8	GO:GO:0003674	GO:GO:0003824
GO:GO:0003860	GO:GO:0016787	InterPro:ClpP/crotonase-like_dom_sf	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF2
PFAM:PF16113	ProteinID:CDX86518	ProteinID:CDX86518.1	SEG:seg	SUPFAM:SSF52096	UniParc:UPI0004EC9036
MapMan:50.3.1	:	:	:	:	:

Description

BnaC08g01850D

Coordinates

chrLK031846:+:383177..386251

Molecular Weight (calculated)

42660.1 Da

IEP (calculated)

5.254

GRAVY (calculated)

-0.245

Length

383 amino acids

Sequence
(BLAST)

001: MAQEGRNIID EQVVVGEEKG SVRLATLNRP RQLNVISSEV VLKLAEFLET WEKDDKTKLI LIKGAGRAFS AGGDLKMFYD GRESKDSCLE VVYRMYWLCY
101: HIHSYKKTQV SLVNGISMGG GASLMVPMKF SVVTEKTVFA TPEASIGFHT DCGFSYIHSR LPGHLGEFLA LTGARLNGKE LVAIGMATHF VPSAKLADLE
201: ARLVSLDSGD VDVVRSTIEE FSEKVDLDKD SILNKQTIID ECFSKESVKQ IIQAFEAEGS KEGNEWITPV IKGLKRSSPT GLKITLRSIR EGRKQTLSDC
301: LKKEFRITIN ILRSTISPDV YEGIRALTID KDSSPKWSPA TLDEVAEEKI NLVFEPLEDD IELHIPETEE NRWGGKYETS GFA

Best Arabidopsis Sequence Match ( AT1G06550.1 )
(BLAST)

001: MAQEGQNIDE PVVIGEEKGS VRLTTLNRPR QLNVISPEVV FKLAEYLELW EKDDQTKLIL IKGTGRAFSA GGDLKVFYHG QESKDSCLEV VYRMYWLCYH
101: IHTYKKTQVS LVNGISMGGG AALMVPMKFS VVTEKTVFAT PEASFGFHTD CGFSYIHSRL PGHLGEFLAL TGARLNGKEL VAIGMATHFV PSGKLMDLEA
201: RLVSLDSGDA DVVQSTIEEF SEKVNLDKDS ILNKQSVINE CFSKESVKQI IQAFEAEASK DGNEWITPVI KGLKRSSPTG LKIVLQSIRE GRKQTLSDCL
301: KKEFRLTLNI LRKTISPDMY EGIRALTIDK DNSPKWNPAT LDEVDDEKIN SVFKLFEDDD IELQIPETEE NRWGGKYETS GYASVRG

Arabidopsis Description

3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.