Factsheet for PGSC0003DMT400066424

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400023026
PGSC0003DMT400044692
PGSC0003DMT400044886
PGSC0003DMT400049429
PGSC0003DMT400051417
PGSC0003DMT400070848
PGSC0003DMT400095815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	PGSC0003DMT400051417	AT1G14830.1	21798944
AT5G65940.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT5G65940.1	PGSC0003DMT400023026	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400049429	AT3G12110.1	21798944
AT5G65940.1	PGSC0003DMT400044886	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400070848	AT5G56630.1	21798944
AT5G65940.1	PGSC0003DMT400095815	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066411	Potato	nucleus	88.24	41.1
PGSC0003DMT400066414	Potato	cytosol	79.41	31.58
PGSC0003DMT400004521	Potato	cytosol	88.24	25.64
GSMUA_Achr5P13890_001	Banana	nucleus	58.82	25.0
Solyc01g108790.1.1	Tomato	nucleus	63.24	24.43
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	48.53	22.15
PGSC0003DMT400004585	Potato	extracellular	80.88	20.6
Zm00001d007746_P002	Maize	peroxisome	54.41	19.47
Zm00001d007726_P001	Maize	peroxisome	54.41	15.1
PGSC0003DMT400000043	Potato	cytosol, mitochondrion, peroxisome	54.41	13.91
CDY45442	Canola	mitochondrion	64.71	13.29
PGSC0003DMT400000054	Potato	cytosol	73.53	13.02
PGSC0003DMT400043000	Potato	cytosol	36.76	12.82
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	64.71	11.89
KRH07311	Soybean	nucleus	66.18	11.63
CDX97894	Canola	peroxisome	66.18	11.6
AT2G30660.1	Thale cress	peroxisome	63.24	11.38
AT2G30650.1	Thale cress	peroxisome	63.24	11.38
CDY57769	Canola	peroxisome	61.76	11.26
CDY31775	Canola	peroxisome	63.24	11.23
CDY45439	Canola	plastid	64.71	11.14
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	63.24	11.0
Bra031802.1-P	Field mustard	cytosol	60.29	10.9
CDY55104	Canola	cytosol	60.29	10.9
EER91893	Sorghum	cytosol	61.76	10.88
AT5G65940.1	Thale cress	peroxisome	60.29	10.85
Bra039968.1-P	Field mustard	peroxisome	61.76	10.53
CDY62818	Canola	peroxisome	61.76	10.47
CDY31769	Canola	peroxisome	61.76	10.47
TraesCS1D01G194800.2	Wheat	cytosol	57.35	10.24
GSMUA_Achr5P13870_001	Banana	cytosol	58.82	10.13
TraesCS1B01G206000.1	Wheat	cytosol	55.88	9.97
TraesCS1A01G190800.1	Wheat	plastid	57.35	9.95
Zm00001d021132_P004	Maize	extracellular	58.82	9.9
GSMUA_Achr8P14800_001	Banana	cytosol	55.88	9.57
Bra018392.1-P	Field mustard	cytosol	51.47	9.41
HORVU1Hr1G049960.6	Barley	mitochondrion	57.35	9.24
Bra018395.1-P	Field mustard	cytosol	50.0	9.12
KXG29172	Sorghum	peroxisome	51.47	9.04
OQU84058	Sorghum	mitochondrion	54.41	9.02
Zm00001d023779_P001	Maize	extracellular	48.53	8.55
PGSC0003DMT400069137	Potato	cytosol, mitochondrion	35.29	8.48
Bra039975.1-P	Field mustard	peroxisome	47.06	8.31
Os12t0264500-02	Rice	endoplasmic reticulum	60.29	7.99
PGSC0003DMT400065713	Potato	cytosol, mitochondrion	27.94	7.92
PGSC0003DMT400020300	Potato	cytosol	36.76	6.51
PGSC0003DMT400041136	Potato	cytosol	32.35	6.34
PGSC0003DMT400079108	Potato	cytosol	30.88	6.1
PGSC0003DMT400057075	Potato	cytosol, plastid	33.82	5.75
Zm00001d007732_P002	Maize	extracellular	22.06	5.26
Zm00001d007740_P001	Maize	peroxisome	22.06	3.98
PGSC0003DMT400066409	Potato	cytosol	5.88	2.88
PGSC0003DMT400004567	Potato	extracellular	2.94	1.52
Zm00001d007728_P001	Maize	cytosol	2.94	1.41
PGSC0003DMT400066419	Potato	cytosol	4.41	1.25
GSMUA_Achr5P13900_001	Banana	cytosol	1.47	0.32
PGSC0003DMT400054311	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400066424	EnsemblPlantsGene:PGSC0003DMG402025828	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	PFAM:PF16113	PGSC:PGSC0003DMG402025828
UniParc:UPI000295E43F	UniProt:M1CFK2	MapMan:35.1	:	:	:

Description

Beta-hydroxyisobutyryl-CoA hydrolase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG402025828]

Coordinates

chr1:+:85188525..85190149

Molecular Weight (calculated)

8142.5 Da

IEP (calculated)

4.372

GRAVY (calculated)

-0.843

Length

68 amino acids

Sequence
(BLAST)

1: MACHVLRGEF SKDFVEGYRA IFIDSDRNPK WEPSRLELIR DDDVDRFFSK IDDEDWEDLK LPPRSNLP

Best Arabidopsis Sequence Match ( AT2G30650.1 )
(BLAST)

001: MASHSQVLVE EKSSVRILTF NRPKQLNALS FHMVSRLLQL FLAYEEDPSV KLVVLKGQGR AFSAGGDIPP IVRDILQGKL IRGAHYFKVG YTLNYVLSTY
101: RKPQVSILNG IVMGGGAGLS TNGRFRIATE NTVFAMPETA LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSIS LTALEAELYK
201: VGSSNQTFIS TILDAYAEYP HLNQHSSYHR LDVIDRCFSK RTVEEIFSAL EREVTQKPND WLLATIQALE KASPSCLKIS LRSIREGRLQ GVGQCLIREY
301: RMVCHVMKGD ISKDFVEGCR AVLIDKDRNP KWQPRRLEDV TDSMVDQYFE RVEDEEGWED LKFPPRNNLP ALAIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEY5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.