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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
ChloroP:plastid
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G344000.1
TraesCS1A01G425200.2
TraesCS1B01G357000.1
TraesCS1B01G459600.2
TraesCS1D01G346200.1
TraesCS1D01G434200.2
TraesCS2A01G327600.1
TraesCS2B01G354400.1
TraesCS2D01G335300.1
TraesCS3A01G224200.2
TraesCS3A01G277700.1
TraesCS3B01G253700.2
TraesCS3B01G311900.2
TraesCS3D01G229400.1
TraesCS3D01G278000.1
TraesCS4A01G266600.1
TraesCS4B01G047700.1
TraesCS4D01G047600.1
TraesCS5A01G413300.1
TraesCS5B01G416700.1
TraesCS5D01G422000.1
TraesCS6A01G207600.3
TraesCS6B01G236300.4
TraesCS6D01G191300.1
TraesCS7A01G336000.1
TraesCS7A01G351500.1
TraesCS7B01G247600.1
TraesCS7B01G276600.1
TraesCS7D01G343700.1
TraesCS7D01G371500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 TraesCS4A01G266600.1 AT1G14830.1 21798944
AT5G65940.1 TraesCS4B01G047700.1 AT1G14830.1 21798944
AT5G65940.1 TraesCS4D01G047600.1 AT1G14830.1 21798944
AT5G65940.1 TraesCS2A01G327600.1 AT2G42490.1 21798944
AT5G65940.1 TraesCS2B01G354400.1 AT2G42490.1 21798944
AT5G65940.1 TraesCS2D01G335300.1 AT2G42490.1 21798944
AT5G65940.1 TraesCS6A01G207600.3 AT2G42490.1 21798944
AT5G65940.1 TraesCS6B01G236300.4 AT2G42490.1 21798944
AT5G65940.1 TraesCS6D01G191300.1 AT2G42490.1 21798944
AT5G65940.1 TraesCS5A01G413300.1 AT2G42790.1 21798944
AT5G65940.1 TraesCS5B01G416700.1 AT2G42790.1 21798944
AT5G65940.1 TraesCS5D01G422000.1 AT2G42790.1 21798944
AT5G65940.1 TraesCS1A01G425200.2 AT4G01090.1 21798944
AT5G65940.1 TraesCS1B01G459600.2 AT4G01090.1 21798944
AT5G65940.1 TraesCS1D01G434200.2 AT4G01090.1 21798944
AT5G65940.1 TraesCS3A01G224200.2 AT4G01090.1 21798944
AT5G65940.1 TraesCS3B01G253700.2 AT4G01090.1 21798944
AT5G65940.1 TraesCS3D01G229400.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS7A01G336000.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS7A01G351500.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS7B01G247600.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS7B01G276600.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS7D01G343700.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS7D01G371500.1 AT4G01090.1 21798944
AT5G65940.1 TraesCS1A01G344000.1 AT5G56630.1 21798944
AT5G65940.1 TraesCS1B01G357000.1 AT5G56630.1 21798944
AT5G65940.1 TraesCS1D01G346200.1 AT5G56630.1 21798944
AT5G65940.1 TraesCS3A01G277700.1 AT5G56630.1 21798944
AT5G65940.1 TraesCS3B01G311900.2 AT5G56630.1 21798944
AT5G65940.1 TraesCS3D01G278000.1 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G206000.1 Wheat cytosol 95.41 98.16
TraesCS1D01G194800.2 Wheat cytosol 94.39 97.11
HORVU1Hr1G049960.6 Barley mitochondrion 92.09 85.55
EER91893 Sorghum cytosol 78.57 79.79
Zm00001d021132_P004 Maize extracellular 77.55 75.25
Zm00001d007726_P001 Maize peroxisome 46.43 74.29
Zm00001d023779_P001 Maize extracellular 70.66 71.76
KXG29172 Sorghum peroxisome 70.15 71.06
Zm00001d007746_P002 Maize peroxisome 34.44 71.05
OQU84058 Sorghum mitochondrion 72.7 69.51
PGSC0003DMT400004567 Potato extracellular 22.45 66.67
PGSC0003DMT400066414 Potato cytosol 28.57 65.5
Solyc01g080930.2.1 Tomato cytosol 62.76 64.23
GSMUA_Achr5P13900_001 Banana cytosol 50.77 63.78
VIT_15s0045g01170.t01 Wine grape cytosol 23.72 63.7
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 59.69 63.24
AT5G65940.1 Thale cress peroxisome 60.97 63.23
KRH07311 Soybean nucleus 61.99 62.79
CDY57769 Canola peroxisome 59.69 62.73
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 60.46 62.53
GSMUA_Achr8P14800_001 Banana cytosol 63.27 62.47
AT2G30660.1 Thale cress peroxisome 60.2 62.43
PGSC0003DMT400066411 Potato nucleus 23.21 62.33
GSMUA_Achr5P13870_001 Banana cytosol 62.5 62.03
Bra031802.1-P Field mustard cytosol 59.44 61.97
CDY55104 Canola cytosol 59.44 61.97
PGSC0003DMT400066409 Potato cytosol 21.94 61.87
Os12t0264500-02 Rice endoplasmic reticulum 80.61 61.6
Zm00001d007740_P001 Maize peroxisome 59.18 61.54
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 40.82 60.15
AT2G30650.1 Thale cress peroxisome 57.91 60.05
Solyc01g094090.2.1 Tomato cytosol 50.26 59.88
CDY31775 Canola peroxisome 58.16 59.53
PGSC0003DMT400000054 Potato cytosol 57.91 59.11
CDX97894 Canola peroxisome 57.91 58.51
Bra018392.1-P Field mustard cytosol 54.85 57.8
Bra018395.1-P Field mustard cytosol 54.59 57.37
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 9.95 57.35
PGSC0003DMT400004521 Potato cytosol 34.18 57.27
CDY62818 Canola peroxisome 58.42 57.11
Bra039968.1-P Field mustard peroxisome 57.65 56.64
CDY31769 Canola peroxisome 57.91 56.61
CDY45442 Canola mitochondrion 47.7 56.5
Zm00001d007732_P002 Maize extracellular 41.07 56.49
PGSC0003DMT400066419 Potato cytosol 34.18 55.83
Bra039975.1-P Field mustard peroxisome 54.59 55.58
PGSC0003DMT400004585 Potato extracellular 37.5 55.06
CDY45439 Canola plastid 54.08 53.67
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 20.15 53.02
Zm00001d007728_P001 Maize cytosol 19.13 52.82
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 46.68 46.8
GSMUA_Achr5P13890_001 Banana nucleus 18.37 45.0
TraesCS1A01G210300.2 Wheat mitochondrion 44.13 42.4
TraesCS3A01G291100.1 Wheat cytosol 35.97 36.62
Solyc01g108790.1.1 Tomato nucleus 15.56 34.66
TraesCS7A01G370500.3 Wheat mitochondrion, plastid 31.12 28.98
Protein Annotations
EnsemblPlants:TraesCS1A01G190800.1EnsemblPlantsGene:TraesCS1A01G190800Gene3D:3.90.226.40GO:GO:0003674GO:GO:0003824GO:GO:0003860
GO:GO:0016787InterPro:ClpP/crotonase-like_dom_sfInterPro:HIBYL-CoA-HPANTHER:PTHR43176PFAM:PF16113SUPFAM:SSF52096
TIGR:cd06558MapMan:4.2.7.4MapMan:4.2.7.6.1:::
Description
No Description!
Coordinates
chr1A:-:345108587..345116464
Molecular Weight (calculated)
42905.7 Da
IEP (calculated)
7.990
GRAVY (calculated)
-0.063
Length
392 amino acids
Sequence
(BLAST)
001: MASPATGDSD QVISLYSSVP GQVLVEANGS TRTLVLNRPK QLNALSSAMV TGLLKCFTSY EEENTVKLLI VKGKGRAFCA GGDVAEVAQS INNDTWKYGA
101: DFFHTEFLLN YIIATYSKPQ VSLLTGIVMG GGAGVSIHGR FRVATGNTVF AMPETALGLF PDIGASYFLS RLPGFYGEYV GLTGARLDGA EMLACGLATH
201: FVPLNRMPLL EESLKKVDTS DPFAICGIID QFSQQPSVKG SSAMNRMEII NRCFSKRTVE EIISALEQEA PSVADKLVTA AIQSLRKASP TSLKISLASI
301: REGRLQTVGE CLRREYRMVC HVMRGDFSRD FFEGCRAILV DKDRNPKWMP PTLDQVHDGV VAKYFSKVDD PQWEDLNLPT RSSHGRRIVP KL
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.