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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • peroxisome 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92178
KRG93168
KRG95386
KRG98876
KRG99420
KRH01660
KRH10268
KRH14452
KRH23061
KRH24799
KRH29804
KRH38098
KRH41722
KRH45608
KRH46090
KRH49665
KRH56507
KRH60421
KRH67068
KRH69629
KRH70357
KRH70465
KRH71847
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G65940.1 KRH41722 AT1G14830.1 21798944
AT5G65940.1 KRH49665 AT1G14830.1 21798944
AT5G65940.1 KRH60421 AT1G14830.1 21798944
AT5G65940.1 KRH70357 AT1G14830.1 21798944
AT5G65940.1 KRG99420 AT2G42490.1 21798944
AT5G65940.1 KRH45608 AT2G42490.1 21798944
AT5G65940.1 KRH69629 AT2G42490.1 21798944
AT5G65940.1 KRG98876 AT2G42790.1 21798944
AT5G65940.1 KRH14452 AT2G42790.1 21798944
AT5G65940.1 KRH46090 AT2G42790.1 21798944
AT5G65940.1 KRH73702 AT2G42790.1 21798944
AT5G65940.1 KRG93168 AT3G12110.1 21798944
AT5G65940.1 KRG95386 AT3G12110.1 21798944
AT5G65940.1 KRH01660 AT3G12110.1 21798944
AT5G65940.1 KRH10268 AT3G12110.1 21798944
AT5G65940.1 KRH23061 AT3G12110.1 21798944
AT5G65940.1 KRH24799 AT3G12110.1 21798944
AT5G65940.1 KRH29804 AT3G12110.1 21798944
AT5G65940.1 KRH38098 AT3G12110.1 21798944
AT5G65940.1 KRH56507 AT3G12110.1 21798944
AT5G65940.1 KRH67068 AT3G12110.1 21798944
AT5G65940.1 KRH70465 AT3G12110.1 21798944
AT5G65940.1 KRH71847 AT3G12110.1 21798944
AT5G65940.1 KRG92178 AT5G56630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004567 Potato extracellular 24.55 71.97
Solyc01g080930.2.1 Tomato cytosol 68.22 68.93
AT5G65940.1 Thale cress peroxisome 66.93 68.52
PGSC0003DMT400066414 Potato cytosol 29.97 67.84
CDY57769 Canola peroxisome 65.12 67.56
PGSC0003DMT400066411 Potato nucleus 25.32 67.12
Bra031802.1-P Field mustard cytosol 65.12 67.02
CDY55104 Canola cytosol 65.12 67.02
PGSC0003DMT400066424 Potato cytosol, nucleus, plastid 11.63 66.18
PGSC0003DMT400000043 Potato cytosol, mitochondrion, peroxisome 45.22 65.79
Solyc01g108800.2.1 Tomato cytoskeleton, cytosol, peroxisome 63.82 65.17
VIT_09s0002g07160.t01 Wine grape mitochondrion, peroxisome, plastid 62.27 65.14
AT2G30660.1 Thale cress peroxisome 63.57 65.08
AT2G30650.1 Thale cress peroxisome 63.31 64.81
TraesCS1D01G194800.2 Wheat cytosol 63.31 64.3
TraesCS1B01G206000.1 Wheat cytosol 63.05 64.04
PGSC0003DMT400066409 Potato cytosol 23.0 64.03
EER91893 Sorghum cytosol 63.31 63.47
CDY31775 Canola peroxisome 62.53 63.19
PGSC0003DMT400000054 Potato cytosol 62.53 63.02
Bra018395.1-P Field mustard cytosol 60.72 63.0
Solyc01g094090.2.1 Tomato cytosol 53.23 62.61
CDX97894 Canola peroxisome 62.53 62.37
TraesCS1A01G190800.1 Wheat plastid 62.79 61.99
PGSC0003DMT400004521 Potato cytosol 37.47 61.97
GSMUA_Achr5P13900_001 Banana cytosol 49.61 61.54
GSMUA_Achr8P14800_001 Banana cytosol 63.05 61.46
CDY62818 Canola peroxisome 63.57 61.35
Bra018392.1-P Field mustard cytosol 58.66 61.02
GSMUA_Achr5P13870_001 Banana cytosol 61.76 60.51
CDY45442 Canola mitochondrion 51.68 60.42
Zm00001d007726_P001 Maize peroxisome 38.24 60.41
Zm00001d021132_P004 Maize extracellular 63.05 60.4
Bra039968.1-P Field mustard peroxisome 61.76 59.9
CDY31769 Canola peroxisome 62.02 59.85
Bra039975.1-P Field mustard peroxisome 58.91 59.22
PGSC0003DMT400004585 Potato extracellular 40.83 59.18
CDY45439 Canola plastid 60.21 58.99
Zm00001d023779_P001 Maize extracellular 58.4 58.55
Zm00001d007746_P002 Maize peroxisome 28.42 57.89
HORVU1Hr1G049960.6 Barley mitochondrion 63.05 57.82
KXG29172 Sorghum peroxisome 57.11 57.11
OQU84058 Sorghum mitochondrion 59.95 56.59
PGSC0003DMT400066419 Potato cytosol 34.63 55.83
CDY71268 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 21.19 55.03
Zm00001d007740_P001 Maize peroxisome 48.06 49.34
VIT_15s0045g01190.t01 Wine grape cytosol, nucleus, peroxisome 49.35 48.85
Zm00001d007732_P002 Maize extracellular 35.92 48.77
KRH09309 Soybean mitochondrion 48.58 47.24
Os12t0264500-02 Rice endoplasmic reticulum 62.53 47.17
GSMUA_Achr5P13890_001 Banana nucleus 18.86 45.62
Zm00001d007728_P001 Maize cytosol 16.28 44.37
KRH46020 Soybean vacuole 43.41 42.21
KRG98957 Soybean nucleus 43.15 41.65
KRH05370 Soybean mitochondrion 43.41 41.28
Solyc01g108790.1.1 Tomato nucleus 18.6 40.91
KRH15650 Soybean mitochondrion 42.64 40.54
KRH66607 Soybean mitochondrion 42.89 38.16
KRH41609 Soybean nucleus 32.56 30.88
KRH60315 Soybean nucleus 32.56 30.88
Protein Annotations
EntrezGene:100170729Gene3D:3.90.226.40MapMan:4.2.7.4MapMan:4.2.7.6.1EMBL:AB333788EMBL:ACUP02009963
UniProt:B0M1A0InterPro:ClpP/crotonase-like_dom_sfEnsemblPlantsGene:GLYMA_16G080900GO:GO:0003674GO:GO:0003824GO:GO:0003860
GO:GO:0016787InterPro:HIBYL-CoA-HEnsemblPlants:KRH07311ProteinID:KRH07311ProteinID:KRH07311.1PFAM:PF16113
PANTHER:PTHR43176PANTHER:PTHR43176:SF6SUPFAM:SSF52096UniParc:UPI000165BB55SEG:seg:
Description
hypothetical protein
Coordinates
chr16:+:8635942..8645227
Molecular Weight (calculated)
42945.7 Da
IEP (calculated)
8.949
GRAVY (calculated)
-0.168
Length
387 amino acids
Sequence
(BLAST)
001: MAFPSKGDDE QVLVQRKSNA RVLTLNRTKQ LNALSFYMVS RLLEIFSEDE KDSDIKLVVV KSSVIKGNGR AFCAGGDVAA VARDGSKGDW RFGANFFQSE
101: FKLNYLMATY SKPQVSILNG IVMGGGAGVS VHGRFRVVTE NTVFAMPETA LGLFPDIGSS YFLSRLPGFL GEYAGLTGAR LDGAEMLACG LATHFVPSSK
201: LSLLEEALCK VETSDPNAVS AIINKYSEQP FLKEDSVYHR MDVINKCFSK KAVEEILSSL EVEATRKADP WISATIQSLK KASPTSLKIF LRSIRQGRLQ
301: GVGQCLVSDY RVVCHILKGH YSKDFFEGCR AILIDKDRNP KWEPSKLELL SDSDVNRYFS KLDDKGWKDL ELPKRFNNLP TYAISKL
Best Arabidopsis Sequence Match ( AT5G65940.4 )
(BLAST)
001: MAVEMASQSQ VLVEEKSSVR ILTLNRPKQL NALSFHMISR LLQLFLAFEE DPSVKLVILK GHGRAFCAGG DVAAVVRDIN QGNWRLGANY FSSEYMLNYV
101: MATYSKAQVS ILNGIVMGGG AGVSVHGRFR IATENTVFAM PETALGLFPD VGASYFLSRL PGFFGEYVGL TGARLDGAEM LACGLATHFV PSTRLTALEA
201: DLCRINSNDP TFASTILDAY TQHPRLKQQS AYRRLDVIDR CFSRRTVEEI ISALEREATQ EADGWISATI QALKKGSPAS LKISLRSIRE GRLQGVGQCL
301: IREYRMVCHV MKGEISKDFV EGCRAILVDK DKNPKWEPRR LEDMKDSMVE QYFERVERED DLKLPPRNNL PALGIAKL
Arabidopsis Description
CHY13-hydroxyisobutyryl-CoA hydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKJ1]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.