Factsheet for Solyc01g108790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005310.2.1
Solyc04g072580.1.1
Solyc05g013440.2.1
Solyc07g045160.2.1
Solyc07g055840.2.1
Solyc09g010750.1.1
Solyc10g086460.1.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65940.1	Solyc01g005310.2.1	AT1G14830.1	21798944
AT5G65940.1	Solyc05g013440.2.1	AT2G42490.1	21798944
AT5G65940.1	Solyc07g055840.2.1	AT2G42790.1	21798944
AT5G65940.1	Solyc12g011000.1.1	AT2G42790.1	21798944
AT5G65940.1	Solyc09g010750.1.1	AT3G12110.1	21798944
AT5G65940.1	Solyc10g086460.1.1	AT3G12110.1	21798944
AT5G65940.1	Solyc04g072580.1.1	AT5G56630.1	21798944
AT5G65940.1	Solyc07g045160.2.1	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066424	Potato	cytosol, nucleus, plastid	24.43	63.24
PGSC0003DMT400066411	Potato	nucleus	39.77	47.95
Solyc05g032680.2.1	Tomato	mitochondrion	21.59	33.63
CDY71268	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	23.3	27.52
Zm00001d007746_P002	Maize	peroxisome	29.55	27.37
GSMUA_Achr5P13890_001	Banana	nucleus	22.73	25.0
Zm00001d007726_P001	Maize	peroxisome	30.68	22.04
Solyc01g080930.2.1	Tomato	cytosol	46.02	21.15
Solyc01g108800.2.1	Tomato	cytoskeleton, cytosol, peroxisome	45.45	21.11
VIT_09s0002g07160.t01	Wine grape	mitochondrion, peroxisome, plastid	40.34	19.19
Solyc07g043690.1.1	Tomato	cytosol	21.02	19.17
CDY45442	Canola	mitochondrion	35.23	18.73
VIT_15s0045g01190.t01	Wine grape	cytosol, nucleus, peroxisome	41.48	18.67
KRH07311	Soybean	nucleus	40.91	18.6
CDY57769	Canola	peroxisome	37.5	17.69
EER91893	Sorghum	cytosol	38.64	17.62
CDY55104	Canola	cytosol	37.5	17.55
Bra031802.1-P	Field mustard	cytosol	37.5	17.55
Bra018395.1-P	Field mustard	cytosol	36.93	17.43
CDY31775	Canola	peroxisome	37.5	17.23
AT2G30650.1	Thale cress	peroxisome	36.93	17.2
AT2G30660.1	Thale cress	peroxisome	36.36	16.93
AT5G65940.1	Thale cress	peroxisome	36.36	16.93
Solyc07g044740.1.1	Tomato	cytosol	12.5	16.92
CDX97894	Canola	peroxisome	36.93	16.75
CDY45439	Canola	plastid	37.5	16.71
Bra039968.1-P	Field mustard	peroxisome	37.5	16.54
Zm00001d021132_P004	Maize	extracellular	37.5	16.34
CDY31769	Canola	peroxisome	36.93	16.21
TraesCS1D01G194800.2	Wheat	cytosol	34.66	16.01
CDY62818	Canola	peroxisome	36.36	15.96
TraesCS1B01G206000.1	Wheat	cytosol	34.09	15.75
TraesCS1A01G190800.1	Wheat	plastid	34.66	15.56
KXG29172	Sorghum	peroxisome	33.52	15.25
OQU84058	Sorghum	mitochondrion	35.23	15.12
GSMUA_Achr8P14800_001	Banana	cytosol	34.09	15.11
Bra018392.1-P	Field mustard	cytosol	31.82	15.05
Zm00001d023779_P001	Maize	extracellular	32.95	15.03
GSMUA_Achr5P13870_001	Banana	cytosol	33.52	14.94
HORVU1Hr1G049960.6	Barley	mitochondrion	35.8	14.93
Bra039975.1-P	Field mustard	peroxisome	30.11	13.77
Os12t0264500-02	Rice	endoplasmic reticulum	37.5	12.87
Solyc05g032690.2.1	Tomato	cytosol, mitochondrion, nucleus	6.25	12.36
Solyc01g090700.2.1	Tomato	mitochondrion	27.84	12.13
Solyc07g043680.2.1	Tomato	cytosol	27.27	12.06
Solyc07g044710.1.1	Tomato	plastid	26.7	11.93
Solyc07g044730.2.1	Tomato	endoplasmic reticulum, vacuole	28.41	11.71
Solyc07g044720.1.1	Tomato	plastid	27.84	11.64
Solyc01g094090.2.1	Tomato	cytosol	21.59	11.55
Solyc10g085630.1.1	Tomato	mitochondrion	26.7	11.46
Solyc05g018410.1.1	Tomato	plastid	18.75	11.0
Solyc12g011160.1.1	Tomato	cytosol	23.86	10.94
Solyc06g054520.1.1	Tomato	cytosol	25.57	10.92
Zm00001d007732_P002	Maize	extracellular	16.48	10.18
Zm00001d007740_P001	Maize	peroxisome	21.02	9.81
GSMUA_Achr5P13900_001	Banana	cytosol	15.91	8.97
Zm00001d007728_P001	Maize	cytosol	3.98	4.93
Solyc07g022880.2.1	Tomato	cytosol	3.41	4.17

Protein Annotations

EnsemblPlants:Solyc01g108790.1.1	EnsemblPlantsGene:Solyc01g108790.1	Gene3D:3.90.226.40	GO:GO:0003674	GO:GO:0003824	GO:GO:0003860
GO:GO:0016787	InterPro:HIBYL-CoA-H	PANTHER:PTHR43176	PANTHER:PTHR43176:SF6	PFAM:PF16113	SEG:seg
UniParc:UPI000276860C	UniProt:K4B394	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1:+:95977734..95978954

Molecular Weight (calculated)

20476.9 Da

IEP (calculated)

9.863

GRAVY (calculated)

-1.212

Length

176 amino acids

Sequence
(BLAST)

001: MDFWNFPDRH QESKFDSHRQ QLSKTSPTKI LNGTPNHQNN NTGKGKKKKV QWIAQQNTLQ PSSSNRQAKA PSQYNLERSK HPPEESEVLD KKDDWISSTI
101: QSLKKAPPTS LKISLRSGCR AILIDRDRNP KWEPSRLEII RDDDVDHYFS KIDDEDWEDL KLPPRSNMSP YAIVKL

Best Arabidopsis Sequence Match ( AT2G30650.1 )
(BLAST)

001: MASHSQVLVE EKSSVRILTF NRPKQLNALS FHMVSRLLQL FLAYEEDPSV KLVVLKGQGR AFSAGGDIPP IVRDILQGKL IRGAHYFKVG YTLNYVLSTY
101: RKPQVSILNG IVMGGGAGLS TNGRFRIATE NTVFAMPETA LGLFPDVGAS YFLSRLPGFF GEYVGLTGAR LDGAEMLACG LATHFVPSIS LTALEAELYK
201: VGSSNQTFIS TILDAYAEYP HLNQHSSYHR LDVIDRCFSK RTVEEIFSAL EREVTQKPND WLLATIQALE KASPSCLKIS LRSIREGRLQ GVGQCLIREY
301: RMVCHVMKGD ISKDFVEGCR AVLIDKDRNP KWQPRRLEDV TDSMVDQYFE RVEDEEGWED LKFPPRNNLP ALAIAAKL

Arabidopsis Description

Probable 3-hydroxyisobutyryl-CoA hydrolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEY5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.