Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77414 | Sorghum | mitochondrion, nucleus | 56.91 | 60.45 |
| KXG21322 | Sorghum | nucleus | 59.31 | 59.63 |
| OQU77422 | Sorghum | cytosol | 32.18 | 42.31 |
| EES17731 | Sorghum | nucleus | 38.3 | 41.62 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 35.11 | 40.37 |
| Os05t0152900-00 | Rice | nucleus | 42.02 | 39.5 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 25.53 | 36.09 |
| Os05t0152600-00 | Rice | mitochondrion | 43.35 | 31.71 |
| EES17735 | Sorghum | mitochondrion | 36.7 | 30.73 |
| KXG32009 | Sorghum | nucleus | 23.4 | 29.73 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 19.68 | 27.82 |
| CDY11709 | Canola | nucleus | 11.97 | 27.27 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 27.39 | 26.96 |
| KXG37941 | Sorghum | cytosol | 19.41 | 26.07 |
| CDY36209 | Canola | plastid | 14.1 | 25.12 |
| KXG32011 | Sorghum | cytosol | 15.96 | 24.69 |
| Bra025434.1-P | Field mustard | nucleus | 18.62 | 24.65 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 14.36 | 24.43 |
| CDX99687 | Canola | nucleus | 18.35 | 24.38 |
| EES00387 | Sorghum | nucleus | 20.48 | 24.14 |
| CDY52473 | Canola | nucleus | 18.09 | 23.94 |
| CDY12498 | Canola | nucleus | 17.02 | 23.53 |
| AT5G37870.1 | Thale cress | nucleus | 17.55 | 23.49 |
| PGSC0003DMT400043047 | Potato | cytosol | 11.44 | 23.37 |
| KXG32010 | Sorghum | extracellular | 15.16 | 23.27 |
| OQU86453 | Sorghum | cytosol | 12.77 | 22.43 |
| Bra012354.1-P | Field mustard | cytosol | 16.22 | 22.43 |
| CDY25763 | Canola | nucleus | 16.22 | 22.43 |
| KRH42263 | Soybean | nucleus | 18.88 | 22.19 |
| KRH58384 | Soybean | nucleus | 18.62 | 21.88 |
| AT5G37910.1 | Thale cress | nucleus | 15.96 | 21.74 |
| CDY10787 | Canola | plastid | 16.49 | 21.45 |
| Bra018266.1-P | Field mustard | plastid | 16.49 | 21.45 |
| CDY01699 | Canola | nucleus, plastid | 15.96 | 21.28 |
| Bra000425.1-P | Field mustard | nucleus | 15.96 | 21.2 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 15.16 | 21.19 |
| AT1G66620.1 | Thale cress | nucleus | 17.29 | 20.77 |
| CDY01757 | Canola | cytosol | 2.93 | 20.75 |
| Bra022858.1-P | Field mustard | nucleus | 16.76 | 20.72 |
| CDY01695 | Canola | nucleus | 17.02 | 20.71 |
| AT5G37890.1 | Thale cress | nucleus | 15.43 | 20.28 |
| OQU86460 | Sorghum | nucleus | 17.82 | 20.06 |
| AT5G37900.1 | Thale cress | nucleus | 12.77 | 19.92 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 15.69 | 19.87 |
| CDY47873 | Canola | nucleus | 17.02 | 19.75 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 15.43 | 19.73 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.31 | 19.55 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 10.37 | 19.5 |
| Solyc03g034460.2.1 | Tomato | nucleus | 18.62 | 19.44 |
| Bra028395.1-P | Field mustard | nucleus | 16.76 | 19.44 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.68 | 19.42 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.35 | 19.17 |
| CDY27008 | Canola | nucleus | 16.76 | 19.15 |
| AT1G66630.1 | Thale cress | cytosol | 15.43 | 19.14 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 16.49 | 19.02 |
| AT1G66650.1 | Thale cress | nucleus | 16.49 | 18.84 |
| KXG32014 | Sorghum | nucleus | 10.9 | 18.64 |
| EES02573 | Sorghum | cytosol | 17.29 | 18.62 |
| AT5G37930.1 | Thale cress | nucleus | 17.29 | 18.62 |
| Bra004402.1-P | Field mustard | nucleus | 15.69 | 18.61 |
| KXG32028 | Sorghum | plastid | 16.49 | 18.45 |
| AT1G66660.2 | Thale cress | nucleus | 16.76 | 18.1 |
| AT5G62800.1 | Thale cress | nucleus | 16.76 | 18.1 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 16.76 | 18.05 |
| Solyc03g034450.2.1 | Tomato | nucleus | 18.62 | 17.86 |
| Bra004174.1-P | Field mustard | nucleus | 16.76 | 17.85 |
| OQU78944 | Sorghum | nucleus | 15.43 | 17.79 |
| CDY70665 | Canola | nucleus | 15.16 | 17.59 |
| Bra004176.1-P | Field mustard | nucleus | 15.69 | 17.51 |
| CDY36211 | Canola | nucleus | 16.49 | 17.17 |
| Solyc03g042520.1.1 | Tomato | nucleus | 14.1 | 17.1 |
| CDX96138 | Canola | nucleus | 15.43 | 17.06 |
| Bra019710.1-P | Field mustard | nucleus | 15.43 | 16.96 |
| AT1G66610.1 | Thale cress | nucleus | 16.49 | 16.94 |
| KXG32085 | Sorghum | nucleus | 9.84 | 16.37 |
| EER97677 | Sorghum | cytosol | 13.03 | 16.23 |
| EER92255 | Sorghum | nucleus | 13.03 | 16.23 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 11.44 | 16.17 |
| OQU84285 | Sorghum | cytosol | 13.03 | 15.76 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 12.77 | 15.64 |
| KXG32019 | Sorghum | nucleus, plastid | 15.16 | 15.32 |
| EES06707 | Sorghum | nucleus | 13.56 | 14.83 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 13.3 | 14.16 |
| EES02574 | Sorghum | nucleus | 16.22 | 13.62 |
| KXG19745 | Sorghum | extracellular | 2.93 | 11.46 |
| KXG22272 | Sorghum | cytosol | 2.93 | 10.78 |
| KXG30435 | Sorghum | cytosol | 2.93 | 10.78 |
| CDY01758 | Canola | cytosol | 10.11 | 8.7 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1Z5R1X2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0046872 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | EnsemblPlants:OQU77425 | ProteinID:OQU77425 |
| ProteinID:OQU77425.1 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF35 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3009G047800 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI000B8BA0B6 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:+:4525864..4527130
Molecular Weight (calculated)
40914.6 Da
IEP (calculated)
4.424
GRAVY (calculated)
-0.297
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRTVEFEAA EYVTDEDDDE LEMEDNVEDS ESHSEDEVDV DAEDMEEDDE DEDLGSDDSV HEQEEEEGGS HEQAPAMAAA PAPPDAVRVR TRTPVANVTV
101: CDADALGCGV CFLALRPPIF QCEVGHVVCS DCRVKLEATP SGNKCHVCGV VAARGGYRRC HAMEHLLDCI RVPCPKATAH RQVCPHAPCH CPAGESCGFI
201: GSTAALLDHF AGAHSWPCTS GSKVRAGKAF SISLRVGFNF VILLADQDHD RDDGEQPATT GSVVVPCRLF LLNVTQERLG RAISVMCIHP HANGVDQPLW
301: TTKCKLAFSH FGSGDENENL CRSHYHYQAS EFKVVSTDLS NGLPIPDSCF QFIVPNAVLG DDDKDYIKVK VCISIN
101: CDADALGCGV CFLALRPPIF QCEVGHVVCS DCRVKLEATP SGNKCHVCGV VAARGGYRRC HAMEHLLDCI RVPCPKATAH RQVCPHAPCH CPAGESCGFI
201: GSTAALLDHF AGAHSWPCTS GSKVRAGKAF SISLRVGFNF VILLADQDHD RDDGEQPATT GSVVVPCRLF LLNVTQERLG RAISVMCIHP HANGVDQPLW
301: TTKCKLAFSH FGSGDENENL CRSHYHYQAS EFKVVSTDLS NGLPIPDSCF QFIVPNAVLG DDDKDYIKVK VCISIN
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.