Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | EES03677 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EES05173 | AT2G27580.1 | 21798944 |
| AT5G37890.1 | EER91893 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | KXG29172 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | OQU84058 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 34.68 | 44.61 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 43.06 | 42.09 |
| KXG21322 | Sorghum | nucleus | 44.8 | 41.44 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 38.73 | 40.98 |
| OQU77422 | Sorghum | cytosol | 32.37 | 39.16 |
| OQU77425 | Sorghum | nucleus | 41.62 | 38.3 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 26.01 | 33.83 |
| CDY11709 | Canola | nucleus | 14.74 | 30.91 |
| KXG32009 | Sorghum | nucleus | 26.01 | 30.41 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 22.25 | 28.95 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 30.64 | 27.75 |
| EES17735 | Sorghum | mitochondrion | 34.68 | 26.73 |
| CDY12498 | Canola | nucleus | 20.52 | 26.1 |
| CDY25763 | Canola | nucleus | 19.94 | 25.37 |
| Bra012354.1-P | Field mustard | cytosol | 19.94 | 25.37 |
| KXG37941 | Sorghum | cytosol | 20.52 | 25.36 |
| Bra025434.1-P | Field mustard | nucleus | 20.81 | 25.35 |
| KXG32011 | Sorghum | cytosol | 17.63 | 25.1 |
| CDY52473 | Canola | nucleus | 20.23 | 24.65 |
| AT5G37870.1 | Thale cress | nucleus | 19.65 | 24.2 |
| CDY36209 | Canola | plastid | 14.74 | 24.17 |
| CDX99687 | Canola | nucleus | 19.65 | 24.03 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 15.03 | 23.53 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 18.21 | 23.42 |
| AT5G37910.1 | Thale cress | nucleus | 18.5 | 23.19 |
| EES00387 | Sorghum | nucleus | 21.1 | 22.88 |
| KXG32010 | Sorghum | extracellular | 16.18 | 22.86 |
| PGSC0003DMT400043047 | Potato | cytosol | 12.14 | 22.83 |
| Bra018266.1-P | Field mustard | plastid | 18.79 | 22.49 |
| CDY10787 | Canola | plastid | 18.79 | 22.49 |
| CDY47873 | Canola | nucleus | 20.81 | 22.22 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 12.72 | 22.0 |
| CDY01699 | Canola | nucleus, plastid | 17.92 | 21.99 |
| Bra028395.1-P | Field mustard | nucleus | 20.52 | 21.91 |
| Bra000425.1-P | Field mustard | nucleus | 17.63 | 21.55 |
| AT5G37890.1 | Thale cress | nucleus | 17.63 | 21.33 |
| Bra022858.1-P | Field mustard | nucleus | 18.5 | 21.05 |
| CDY27008 | Canola | nucleus | 19.94 | 20.97 |
| KXG32014 | Sorghum | nucleus | 13.29 | 20.91 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 17.63 | 20.54 |
| AT1G66620.1 | Thale cress | nucleus | 18.5 | 20.45 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 17.34 | 20.41 |
| CDY01695 | Canola | nucleus | 18.21 | 20.39 |
| AT5G37930.1 | Thale cress | nucleus | 20.52 | 20.34 |
| KRH58384 | Soybean | nucleus | 18.79 | 20.31 |
| AT1G66630.1 | Thale cress | cytosol | 17.63 | 20.13 |
| OQU86453 | Sorghum | cytosol | 12.43 | 20.09 |
| KRH42263 | Soybean | nucleus | 18.5 | 20.0 |
| AT5G37900.1 | Thale cress | nucleus | 13.29 | 19.09 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 9.83 | 18.99 |
| Bra004402.1-P | Field mustard | nucleus | 17.34 | 18.93 |
| OQU78944 | Sorghum | nucleus | 17.34 | 18.4 |
| AT1G66660.2 | Thale cress | nucleus | 18.5 | 18.39 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 18.5 | 18.34 |
| CDY70665 | Canola | nucleus | 17.05 | 18.21 |
| KXG32085 | Sorghum | nucleus | 11.85 | 18.14 |
| Bra004174.1-P | Field mustard | nucleus | 18.5 | 18.13 |
| AT5G62800.1 | Thale cress | nucleus | 18.21 | 18.1 |
| Solyc03g034460.2.1 | Tomato | nucleus | 18.79 | 18.06 |
| AT1G66650.1 | Thale cress | nucleus | 16.76 | 17.63 |
| PGSC0003DMT400043050 | Potato | nucleus | 19.36 | 17.59 |
| Solyc03g042550.1.1 | Tomato | nucleus | 18.21 | 17.5 |
| OQU86434 | Sorghum | endoplasmic reticulum, plasma membrane | 16.47 | 17.48 |
| OQU86460 | Sorghum | nucleus | 16.76 | 17.37 |
| KXG32028 | Sorghum | plastid | 16.76 | 17.26 |
| Bra019710.1-P | Field mustard | nucleus | 17.05 | 17.25 |
| Solyc03g042520.1.1 | Tomato | nucleus | 15.32 | 17.1 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 13.01 | 16.92 |
| EER92255 | Sorghum | nucleus | 14.74 | 16.89 |
| EES02573 | Sorghum | cytosol | 16.76 | 16.62 |
| Bra004176.1-P | Field mustard | nucleus | 15.9 | 16.32 |
| EES02178 | Sorghum | cytosol, nucleus, peroxisome | 14.45 | 16.29 |
| CDX96138 | Canola | nucleus | 15.9 | 16.18 |
| Solyc03g034450.2.1 | Tomato | nucleus | 18.21 | 16.07 |
| EES06707 | Sorghum | nucleus | 15.9 | 15.99 |
| KXG32019 | Sorghum | nucleus, plastid | 17.05 | 15.86 |
| AT1G66610.1 | Thale cress | nucleus | 16.76 | 15.85 |
| CDY36211 | Canola | nucleus | 16.47 | 15.79 |
| OQU84285 | Sorghum | cytosol | 14.16 | 15.76 |
| EER97677 | Sorghum | cytosol | 13.58 | 15.56 |
| EES19270 | Sorghum | cytosol, nucleus, peroxisome | 15.03 | 14.73 |
| EES02574 | Sorghum | nucleus | 17.34 | 13.39 |
| CDY01757 | Canola | cytosol | 1.73 | 11.32 |
| CDY01758 | Canola | cytosol | 12.14 | 9.61 |
| KXG19745 | Sorghum | extracellular | 2.6 | 9.38 |
| KXG22272 | Sorghum | cytosol | 2.02 | 6.86 |
| KXG30435 | Sorghum | cytosol | 2.02 | 6.86 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:8075993 | UniProt:C5Z068 | EnsemblPlants:EES17731 |
| ProteinID:EES17731 | ProteinID:EES17731.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 |
| PANTHER:PTHR10315 | PANTHER:PTHR10315:SF35 | InterPro:SINA-like | EnsemblPlantsGene:SORBI_3009G047400 | SUPFAM:SSF49599 | SUPFAM:SSF57850 |
| unigene:Sbi.5555 | InterPro:TRAF-like | UniParc:UPI0001A887CC | RefSeq:XP_002439301.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_SIAH | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:4482172..4485280
Molecular Weight (calculated)
37107.3 Da
IEP (calculated)
7.372
GRAVY (calculated)
-0.134
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALQDSGSK DPAAKRAGRG VGGEPKQKRA RSIVVDTGGG GGSSAPATAP ASESRAHPGS AAASLVDADA LDCVVCYLPL KPPIFQCDVG HAVCSRCRDK
101: LQATGKCPVC RAVAGRYRRC HVMEQLVESI RVPCAYAAHG CALRLVYYDQ ESHLLVCEHA PCHCPGEACS FVGSMAALLD HCSTAHKWPC ITTVKPNDED
201: ELTICLHDGF NFILADCSTD NKNQSSTASI QCLLLMTVAR HPYARIISVH CIDPHAAGSG GQVATSKEMQ CQLQYSLHKG SCSLSGNDPV IYNWQIQVSR
301: FRVARTDLSN GLPKPDDCFQ VVVPNSVIED YDKDGIKVNV RIIIKE
101: LQATGKCPVC RAVAGRYRRC HVMEQLVESI RVPCAYAAHG CALRLVYYDQ ESHLLVCEHA PCHCPGEACS FVGSMAALLD HCSTAHKWPC ITTVKPNDED
201: ELTICLHDGF NFILADCSTD NKNQSSTASI QCLLLMTVAR HPYARIISVH CIDPHAAGSG GQVATSKEMQ CQLQYSLHKG SCSLSGNDPV IYNWQIQVSR
301: FRVARTDLSN GLPKPDDCFQ VVVPNSVIED YDKDGIKVNV RIIIKE
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.