Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77422 | Sorghum | cytosol | 41.26 | 38.81 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 42.75 | 35.17 |
| EES17731 | Sorghum | nucleus | 44.61 | 34.68 |
| Os05t0152900-00 | Rice | nucleus | 44.24 | 29.75 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 30.11 | 28.72 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 29.0 | 28.47 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 29.0 | 28.36 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 28.25 | 28.25 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 28.62 | 28.0 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 27.88 | 27.99 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 32.34 | 27.62 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 29.74 | 27.59 |
| TraesCS1A01G070000.1 | Wheat | plastid | 24.54 | 27.16 |
| CDY11709 | Canola | nucleus | 16.36 | 26.67 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 29.37 | 25.73 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 26.77 | 25.62 |
| CDY12498 | Canola | nucleus | 25.65 | 25.37 |
| Bra012354.1-P | Field mustard | cytosol | 25.28 | 25.0 |
| CDY25763 | Canola | nucleus | 25.28 | 25.0 |
| Os05t0152600-00 | Rice | mitochondrion | 46.47 | 24.32 |
| Bra025434.1-P | Field mustard | nucleus | 25.28 | 23.94 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 26.39 | 23.91 |
| CDX99687 | Canola | nucleus | 24.91 | 23.67 |
| CDY52473 | Canola | nucleus | 24.91 | 23.59 |
| CDY36209 | Canola | plastid | 17.84 | 22.75 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 22.68 | 22.68 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 21.93 | 21.53 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 14.13 | 21.47 |
| AT1G66630.1 | Thale cress | cytosol | 24.16 | 21.45 |
| AT5G37910.1 | Thale cress | nucleus | 21.93 | 21.38 |
| AT5G37870.1 | Thale cress | nucleus | 22.3 | 21.35 |
| Bra000425.1-P | Field mustard | nucleus | 21.93 | 20.85 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.1 | 20.81 |
| AT5G37900.1 | Thale cress | nucleus | 18.59 | 20.75 |
| AT1G66620.1 | Thale cress | nucleus | 23.79 | 20.45 |
| CDY10787 | Canola | plastid | 21.93 | 20.42 |
| Bra018266.1-P | Field mustard | plastid | 21.93 | 20.42 |
| KRH58384 | Soybean | nucleus | 24.16 | 20.31 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 24.91 | 20.24 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 20.45 | 20.22 |
| CDY01699 | Canola | nucleus, plastid | 21.19 | 20.21 |
| KRH42263 | Soybean | nucleus | 23.79 | 20.0 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 25.28 | 20.0 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.93 | 19.87 |
| CDY01695 | Canola | nucleus | 22.68 | 19.74 |
| Bra022858.1-P | Field mustard | nucleus | 22.3 | 19.74 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 21.56 | 19.73 |
| PGSC0003DMT400043047 | Potato | cytosol | 13.38 | 19.57 |
| AT5G37890.1 | Thale cress | nucleus | 20.45 | 19.23 |
| TraesCS3A01G027500.1 | Wheat | plastid | 19.7 | 19.2 |
| CDY47873 | Canola | nucleus | 23.05 | 19.14 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 19.7 | 19.0 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 12.64 | 18.99 |
| Bra028395.1-P | Field mustard | nucleus | 22.68 | 18.83 |
| AT5G37930.1 | Thale cress | nucleus | 24.16 | 18.62 |
| Bra004402.1-P | Field mustard | nucleus | 21.56 | 18.3 |
| CDY27008 | Canola | nucleus | 22.3 | 18.24 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 17.47 | 18.15 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 13.38 | 18.0 |
| CDY70665 | Canola | nucleus | 21.56 | 17.9 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 23.05 | 17.77 |
| Bra004174.1-P | Field mustard | nucleus | 23.05 | 17.56 |
| Bra019710.1-P | Field mustard | nucleus | 22.3 | 17.54 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 29.37 | 17.32 |
| AT1G66650.1 | Thale cress | nucleus | 20.82 | 17.02 |
| AT5G62800.1 | Thale cress | nucleus | 21.93 | 16.95 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 13.01 | 16.75 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 19.33 | 16.67 |
| Solyc03g034460.2.1 | Tomato | nucleus | 22.3 | 16.67 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 18.96 | 16.4 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 18.22 | 16.28 |
| Solyc03g042550.1.1 | Tomato | nucleus | 21.56 | 16.11 |
| AT1G66660.2 | Thale cress | nucleus | 20.82 | 16.09 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 22.3 | 16.09 |
| AT1G66610.1 | Thale cress | nucleus | 21.56 | 15.85 |
| PGSC0003DMT400043050 | Potato | nucleus | 22.3 | 15.75 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 10.78 | 15.59 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 19.7 | 15.54 |
| Bra004176.1-P | Field mustard | nucleus | 19.33 | 15.43 |
| CDX96138 | Canola | nucleus | 19.33 | 15.29 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 19.7 | 15.27 |
| Solyc03g042520.1.1 | Tomato | nucleus | 17.47 | 15.16 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.45 | 15.07 |
| Solyc03g034450.2.1 | Tomato | nucleus | 21.93 | 15.05 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 17.1 | 14.42 |
| CDY36211 | Canola | nucleus | 18.96 | 14.13 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 10.04 | 13.5 |
| CDY01757 | Canola | cytosol | 2.6 | 13.21 |
| CDY01758 | Canola | cytosol | 14.13 | 8.7 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF35 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS2A01G446400 | EnsemblPlants:TraesCS2A01G446400.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:695504948..695506149
Molecular Weight (calculated)
29368.0 Da
IEP (calculated)
4.896
GRAVY (calculated)
-0.065
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPSTRAAL ENLTLADADA LDCGVCCLPL KPPIFQCGVG HALCEQCRGK LASARTCHVC RAPMADGYRR NHDLERLVEP IRAPCPNAAY GRAARPVYYD
101: GPRHLEDCLH APCHCPEEAC GFVGSTEMLL AHFAGEHEWP CTTGARAGES FSVDLEDGFN VVIVGDGARE LLFLVMVSPV SLGRAVSAVC VCPRTDGGDE
201: IFYGVELEFE RLGGWYGERL KSFFNVECTN LSSGLPDPDH RFQFLLPNSV KPYEAETINI QACIYTQIQ
101: GPRHLEDCLH APCHCPEEAC GFVGSTEMLL AHFAGEHEWP CTTGARAGES FSVDLEDGFN VVIVGDGARE LLFLVMVSPV SLGRAVSAVC VCPRTDGGDE
201: IFYGVELEFE RLGGWYGERL KSFFNVECTN LSSGLPDPDH RFQFLLPNSV KPYEAETINI QACIYTQIQ
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.