Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G005260.1 | Barley | cytosol | 24.63 | 72.53 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 67.16 | 65.45 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 59.33 | 59.11 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 45.9 | 46.24 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 33.96 | 33.21 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 34.7 | 32.98 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 33.58 | 32.73 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 33.96 | 29.64 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 30.97 | 28.62 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 29.85 | 28.47 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 27.99 | 27.88 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 29.48 | 26.6 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.64 | 26.24 |
| CDY36209 | Canola | plastid | 20.15 | 25.59 |
| CDY01699 | Canola | nucleus, plastid | 25.75 | 24.47 |
| PGSC0003DMT400043047 | Potato | cytosol | 16.79 | 24.46 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 28.73 | 24.44 |
| CDY25763 | Canola | nucleus | 24.63 | 24.26 |
| Bra012354.1-P | Field mustard | cytosol | 24.63 | 24.26 |
| CDY12498 | Canola | nucleus | 24.63 | 24.26 |
| AT5G37900.1 | Thale cress | nucleus | 21.27 | 23.65 |
| CDY11709 | Canola | nucleus | 14.55 | 23.64 |
| Bra000425.1-P | Field mustard | nucleus | 24.63 | 23.32 |
| Bra025434.1-P | Field mustard | nucleus | 24.63 | 23.24 |
| CDY52473 | Canola | nucleus | 24.63 | 23.24 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 29.48 | 23.24 |
| AT5G37870.1 | Thale cress | nucleus | 24.25 | 23.13 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 23.13 | 23.05 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 23.51 | 22.99 |
| CDX99687 | Canola | nucleus | 24.25 | 22.97 |
| AT5G37910.1 | Thale cress | nucleus | 23.51 | 22.83 |
| KRH42263 | Soybean | nucleus | 26.87 | 22.5 |
| CDY10787 | Canola | plastid | 24.25 | 22.49 |
| Bra018266.1-P | Field mustard | plastid | 24.25 | 22.49 |
| TraesCS3A01G027500.1 | Wheat | plastid | 23.13 | 22.46 |
| AT5G37890.1 | Thale cress | nucleus | 23.88 | 22.38 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 16.42 | 22.0 |
| TraesCS1A01G070000.1 | Wheat | plastid | 19.78 | 21.81 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 23.88 | 21.77 |
| AT1G66620.1 | Thale cress | nucleus | 25.37 | 21.73 |
| KRH58384 | Soybean | nucleus | 25.75 | 21.56 |
| AT1G66630.1 | Thale cress | cytosol | 24.25 | 21.45 |
| Bra022858.1-P | Field mustard | nucleus | 24.25 | 21.38 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 21.64 | 21.32 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 23.51 | 21.21 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 26.12 | 21.15 |
| Bra028395.1-P | Field mustard | nucleus | 25.0 | 20.68 |
| CDY47873 | Canola | nucleus | 25.0 | 20.68 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.81 | 20.67 |
| CDY27008 | Canola | nucleus | 25.0 | 20.36 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 13.43 | 20.34 |
| Bra004402.1-P | Field mustard | nucleus | 23.88 | 20.19 |
| CDY01695 | Canola | nucleus | 23.13 | 20.06 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 33.58 | 19.74 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 14.55 | 19.5 |
| Solyc03g034460.2.1 | Tomato | nucleus | 25.75 | 19.17 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 19.78 | 19.0 |
| AT5G37930.1 | Thale cress | nucleus | 24.63 | 18.91 |
| Solyc03g042550.1.1 | Tomato | nucleus | 25.37 | 18.89 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 24.25 | 18.62 |
| AT1G66610.1 | Thale cress | nucleus | 25.37 | 18.58 |
| AT1G66650.1 | Thale cress | nucleus | 22.76 | 18.54 |
| Bra004174.1-P | Field mustard | nucleus | 24.25 | 18.41 |
| AT5G62800.1 | Thale cress | nucleus | 23.88 | 18.39 |
| Solyc03g042520.1.1 | Tomato | nucleus | 21.27 | 18.39 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 21.27 | 18.33 |
| CDY70665 | Canola | nucleus | 21.27 | 17.59 |
| PGSC0003DMT400043050 | Potato | nucleus | 25.0 | 17.59 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 16.79 | 17.37 |
| Bra019710.1-P | Field mustard | nucleus | 22.01 | 17.25 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 23.13 | 16.99 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 18.66 | 16.61 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.25 | 16.58 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 18.66 | 16.03 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 19.03 | 15.99 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 12.31 | 15.79 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 21.64 | 15.55 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 19.78 | 15.54 |
| AT1G66660.2 | Thale cress | nucleus | 19.78 | 15.23 |
| Bra004176.1-P | Field mustard | nucleus | 18.66 | 14.84 |
| CDX96138 | Canola | nucleus | 18.66 | 14.71 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 19.03 | 14.7 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 10.07 | 14.52 |
| CDY36211 | Canola | nucleus | 19.4 | 14.4 |
| CDY01757 | Canola | cytosol | 1.87 | 9.43 |
| CDY01758 | Canola | cytosol | 13.81 | 8.47 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3A01G031200 | EnsemblPlants:TraesCS3A01G031200.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:17065990..17067246
Molecular Weight (calculated)
29573.7 Da
IEP (calculated)
6.852
GRAVY (calculated)
-0.058
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKREEREKD EGGVSQRMKV GAAGPIFTID DLDCSICCHP MRPPIFQYTV GHTICSSCHD KLPGKCYFFS LPTVYNRCNW LEYVVESLKV ACPNGCTVSI
101: KYYQKVEHEK ECLHAPCFCP IANCGFSGPT AMLLEHFSSQ HNLRSLEVPY SEWFGIYMHV NVDPPTSATA LVGQDGHIFL VCMKLESSGG VIKVCCVQPH
201: NTGIKFKCAL ALSCTKTGYS QATEFQTRNT NLYDGLPDDG FPFLVPKVLL PAAGTSGTIV VHMELTPQ
101: KYYQKVEHEK ECLHAPCFCP IANCGFSGPT AMLLEHFSSQ HNLRSLEVPY SEWFGIYMHV NVDPPTSATA LVGQDGHIFL VCMKLESSGG VIKVCCVQPH
201: NTGIKFKCAL ALSCTKTGYS QATEFQTRNT NLYDGLPDDG FPFLVPKVLL PAAGTSGTIV VHMELTPQ
001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.