Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G101600.1 | Wheat | nucleus | 54.55 | 64.41 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 44.98 | 50.54 |
| HORVU3Hr1G018420.2 | Barley | plastid | 73.68 | 48.58 |
| Zm00001d040046_P001 | Maize | cytosol, mitochondrion, nucleus | 41.15 | 38.39 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 47.37 | 35.48 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 42.11 | 33.98 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 35.89 | 28.2 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 31.1 | 23.9 |
| TraesCS3A01G027500.1 | Wheat | plastid | 30.14 | 22.83 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 29.67 | 22.63 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 24.88 | 17.51 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 20.1 | 15.33 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 22.49 | 15.31 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 20.57 | 15.3 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 23.92 | 15.11 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.62 | 14.91 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 20.57 | 14.83 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 22.01 | 14.6 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 19.14 | 14.18 |
| TraesCS1A01G070000.1 | Wheat | plastid | 16.27 | 13.99 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 17.7 | 13.75 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 20.1 | 13.5 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 20.1 | 13.46 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 16.75 | 13.01 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 18.66 | 12.96 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 16.75 | 12.73 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 20.57 | 12.61 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 19.14 | 12.54 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 15.79 | 12.31 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 20.1 | 12.1 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 19.62 | 12.06 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 20.57 | 11.78 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 19.14 | 10.72 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 9.57 | 10.0 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 21.53 | 9.87 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF30 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3A01G101400 | EnsemblPlants:TraesCS3A01G101400.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:65952815..65953444
Molecular Weight (calculated)
23542.1 Da
IEP (calculated)
8.484
GRAVY (calculated)
-0.357
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRKCPSCNE PIGDFRCRAT EKILAGMTRP CRFKKHGCTE TVRYTEARAH EEEACRFAPY SCPFDGCDYR GRLLYGHIRD AHEPAGDAAT LAANKTWTTH
101: AMTVKVTLQK STPFRALLHP DEESVFLLLN GGDDLTGRSL SLVRICPYAA QVDGRYVVRV HAEYPWWVSA SGKAQFVRQL QGYKARRLLI VPDDFWGSSG
201: SITVNVDLF
101: AMTVKVTLQK STPFRALLHP DEESVFLLLN GGDDLTGRSL SLVRICPYAA QVDGRYVVRV HAEYPWWVSA SGKAQFVRQL QGYKARRLLI VPDDFWGSSG
201: SITVNVDLF
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.