Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G504400.1 | Wheat | cytosol | 86.02 | 79.6 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 50.54 | 44.98 |
| HORVU3Hr1G018640.1 | Barley | cytosol | 48.92 | 43.75 |
| Zm00001d040046_P001 | Maize | cytosol, mitochondrion, nucleus | 42.47 | 35.27 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 31.72 | 33.33 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 44.09 | 29.39 |
| OQU86439 | Sorghum | cytosol, mitochondrion, plastid | 41.4 | 28.95 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 39.78 | 28.57 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 30.65 | 20.96 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 30.65 | 20.8 |
| TraesCS3A01G027500.1 | Wheat | plastid | 30.65 | 20.65 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 22.04 | 13.8 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 19.35 | 13.09 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 20.97 | 12.7 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 17.2 | 11.9 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 19.89 | 11.75 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 17.74 | 11.7 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 17.2 | 11.39 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 17.74 | 11.38 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 20.43 | 11.18 |
| TraesCS1A01G070000.1 | Wheat | plastid | 14.52 | 11.11 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 19.35 | 10.88 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 15.59 | 10.78 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 15.05 | 10.22 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 15.05 | 10.18 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 14.52 | 10.07 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 16.13 | 9.65 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 15.05 | 9.3 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 15.05 | 8.97 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 15.59 | 8.5 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 15.59 | 8.36 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 13.98 | 8.15 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 16.13 | 8.04 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 19.35 | 7.89 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 13.98 | 7.12 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 5.91 | 5.5 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 |
| InterPro:IPR013010 | InterPro:IPR013083 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF30 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS4A01G369000 | EnsemblPlants:TraesCS4A01G369000.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
Description
No Description!
Coordinates
chr4A:+:641419023..641419583
Molecular Weight (calculated)
20620.7 Da
IEP (calculated)
6.665
GRAVY (calculated)
-0.277
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHKFRKLGC GETVKFTELR SHEEEACPYA TYSCPFDGCA YRGALLYDHV HDEHAQAPAP VPNCDMVGGL LRGATVTLRR DEPVHTLLHR DRVSVILLLN
101: GGDVLTGRSL SLVRICPHPK PDQEDEEVEY RMVVMRGEPG PGSPSLTASG RVQYVRRLEG CQPQHFLFVP DAFWGSSGSV VVTVHL
101: GGDVLTGRSL SLVRICPHPK PDQEDEEVEY RMVVMRGEPG PGSPSLTASG RVQYVRRLEG CQPQHFLFVP DAFWGSSGSV VVTVHL
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.