Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G190800.1 | |
| TraesCS1B01G206000.1 | |
| TraesCS1D01G194800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G37890.1 | TraesCS1A01G190800.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1B01G206000.1 | AT5G65940.1 | 21798944 |
| AT5G37890.1 | TraesCS1D01G194800.2 | AT5G65940.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G061700.1 | Wheat | nucleus | 88.93 | 77.56 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 80.78 | 74.7 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 46.91 | 52.36 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 47.56 | 51.77 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 53.09 | 47.94 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 69.06 | 46.49 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 36.81 | 38.97 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 32.25 | 36.8 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 31.27 | 35.04 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 29.64 | 33.96 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 29.64 | 33.09 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 29.97 | 32.74 |
| CDY11709 | Canola | nucleus | 17.59 | 32.73 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 32.25 | 31.43 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 25.73 | 29.37 |
| CDY36209 | Canola | plastid | 19.54 | 28.44 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 27.04 | 27.95 |
| CDY52473 | Canola | nucleus | 24.76 | 26.76 |
| CDY01699 | Canola | nucleus, plastid | 24.43 | 26.6 |
| TraesCS3A01G101600.1 | Wheat | nucleus | 15.31 | 26.55 |
| CDY12498 | Canola | nucleus | 23.45 | 26.47 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.89 | 26.24 |
| CDX99687 | Canola | nucleus | 24.1 | 26.15 |
| Bra012354.1-P | Field mustard | cytosol | 23.13 | 26.1 |
| CDY25763 | Canola | nucleus | 23.13 | 26.1 |
| Bra025434.1-P | Field mustard | nucleus | 24.1 | 26.06 |
| Bra004401.1-P | Field mustard | cytosol, mitochondrion, nucleus | 22.48 | 25.65 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.31 | 25.54 |
| TraesCS3A01G025200.1 | Wheat | cytosol, nucleus, plastid | 22.48 | 25.18 |
| Bra000425.1-P | Field mustard | nucleus | 23.13 | 25.09 |
| AT1G66620.1 | Thale cress | nucleus | 25.41 | 24.92 |
| AT1G66630.1 | Thale cress | cytosol | 24.43 | 24.75 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 27.69 | 24.36 |
| Bra018266.1-P | Field mustard | plastid | 22.8 | 24.22 |
| CDY10787 | Canola | plastid | 22.8 | 24.22 |
| AT5G37870.1 | Thale cress | nucleus | 22.15 | 24.2 |
| Bra004174.1-P | Field mustard | nucleus | 27.69 | 24.08 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 15.64 | 24.0 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 22.8 | 23.81 |
| AT5G37890.1 | Thale cress | nucleus | 22.15 | 23.78 |
| Bra022858.1-P | Field mustard | nucleus | 23.45 | 23.68 |
| AT5G37900.1 | Thale cress | nucleus | 18.24 | 23.24 |
| TraesCS3A01G027500.1 | Wheat | plastid | 20.85 | 23.19 |
| TraesCS3A01G027900.1 | Wheat | cytosol | 20.52 | 23.16 |
| CDY47873 | Canola | nucleus | 24.1 | 22.84 |
| Bra028395.1-P | Field mustard | nucleus | 24.1 | 22.84 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 21.82 | 22.56 |
| CDY27008 | Canola | nucleus | 24.1 | 22.49 |
| TraesCS3A01G101400.1 | Wheat | cytosol | 15.31 | 22.49 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 13.03 | 22.35 |
| AT1G66650.1 | Thale cress | nucleus | 23.45 | 21.88 |
| KRH42263 | Soybean | nucleus | 22.8 | 21.88 |
| TraesCS4A01G395500.1 | Wheat | cytosol | 19.87 | 21.86 |
| Bra004402.1-P | Field mustard | nucleus | 22.48 | 21.77 |
| AT5G37910.1 | Thale cress | nucleus | 19.54 | 21.74 |
| AT1G66610.1 | Thale cress | nucleus | 25.73 | 21.58 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 23.13 | 21.45 |
| TraesCS1A01G070000.1 | Wheat | plastid | 16.94 | 21.4 |
| KRH58384 | Soybean | nucleus | 22.15 | 21.25 |
| TraesCS4A01G369000.1 | Wheat | cytosol | 12.7 | 20.97 |
| AT5G37930.1 | Thale cress | nucleus | 23.78 | 20.92 |
| TraesCS6A01G086800.1 | Wheat | nucleus | 21.17 | 20.9 |
| Solyc03g034460.2.1 | Tomato | nucleus | 24.43 | 20.83 |
| TraesCS4A01G148400.2 | Wheat | nucleus | 20.2 | 20.6 |
| PGSC0003DMT400043050 | Potato | nucleus | 25.41 | 20.47 |
| AT5G62800.1 | Thale cress | nucleus | 23.13 | 20.4 |
| CDY01695 | Canola | nucleus | 20.52 | 20.39 |
| Solyc03g042550.1.1 | Tomato | nucleus | 23.78 | 20.28 |
| TraesCS4A01G395600.1 | Wheat | cytosol | 16.94 | 20.08 |
| TraesCS1A01G371400.1 | Wheat | cytosol | 13.03 | 20.0 |
| TraesCS2A01G129000.1 | Wheat | plasma membrane | 20.52 | 19.75 |
| CDY70665 | Canola | nucleus | 20.52 | 19.44 |
| TraesCS3A01G158000.1 | Wheat | cytosol, nucleus, plasma membrane | 19.54 | 19.23 |
| Solyc03g034450.2.1 | Tomato | nucleus | 24.43 | 19.13 |
| Bra019710.1-P | Field mustard | nucleus | 20.85 | 18.71 |
| TraesCS7A01G332700.1 | Wheat | cytosol, nucleus, peroxisome | 20.2 | 18.18 |
| AT1G66660.2 | Thale cress | nucleus | 20.52 | 18.1 |
| Bra004176.1-P | Field mustard | nucleus | 19.87 | 18.1 |
| CDX96138 | Canola | nucleus | 19.87 | 17.94 |
| TraesCS1A01G136400.2 | Wheat | cytoskeleton, nucleus, peroxisome | 20.2 | 17.87 |
| Solyc03g042520.1.1 | Tomato | nucleus | 17.92 | 17.74 |
| CDY36211 | Canola | nucleus | 19.87 | 16.9 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 20.52 | 16.89 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 18.57 | 15.62 |
| CDY01758 | Canola | cytosol | 16.29 | 11.44 |
| CDY01757 | Canola | cytosol | 1.95 | 11.32 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
| PANTHER:PTHR10315:SF43 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS1A01G060800 | EnsemblPlants:TraesCS1A01G060800.1 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:-:41758210..41759420
Molecular Weight (calculated)
33617.5 Da
IEP (calculated)
7.596
GRAVY (calculated)
-0.137
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MAINGSSSSK RKVEAQREGG SSSKKLNVTV GLETLDCTIC SAPLRPPIFQ CSVGHFICSS CREREDQLDY KCPTCSAKTS FKRCFGMEHV VQSVTVACSN
101: DKYGCAEKFT YYKKEEHEKA CPNAPCFCPE PGCEFAGPTK MLLDHFAAQH KCPSTNLPDS GTVSLRLKPG LHVLQCTDTS YFFLLSMATK PFGHAISVVC
201: VQPNVTEFRF ACTMSYDCLT TGCCGSTSCH IRSSSLSDGL PTVYDLILPK GKVSDDENDI MLKATIHRQP LGLSRSCFPE MGPTPVRVVS NIIVQVRLQL
301: DLELYGV
101: DKYGCAEKFT YYKKEEHEKA CPNAPCFCPE PGCEFAGPTK MLLDHFAAQH KCPSTNLPDS GTVSLRLKPG LHVLQCTDTS YFFLLSMATK PFGHAISVVC
201: VQPNVTEFRF ACTMSYDCLT TGCCGSTSCH IRSSSLSDGL PTVYDLILPK GKVSDDENDI MLKATIHRQP LGLSRSCFPE MGPTPVRVVS NIIVQVRLQL
301: DLELYGV
001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.