Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G37910.1 | Thale cress | nucleus | 58.36 | 59.42 |
| AT5G37890.1 | Thale cress | nucleus | 55.52 | 54.55 |
| AT5G37900.1 | Thale cress | nucleus | 45.2 | 52.7 |
| HORVU3Hr1G005260.1 | Barley | cytosol | 13.88 | 42.86 |
| AT1G66620.1 | Thale cress | nucleus | 43.42 | 38.98 |
| AT1G66630.1 | Thale cress | cytosol | 40.21 | 37.29 |
| AT5G62800.1 | Thale cress | nucleus | 45.55 | 36.78 |
| AT1G66610.1 | Thale cress | nucleus | 44.13 | 33.88 |
| AT1G66650.1 | Thale cress | nucleus | 37.72 | 32.22 |
| AT5G37930.1 | Thale cress | nucleus | 38.79 | 31.23 |
| VIT_14s0006g01870.t01 | Wine grape | cytosol | 21.35 | 30.0 |
| Solyc03g036460.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.49 | 29.86 |
| KRH42263 | Soybean | nucleus | 33.1 | 29.06 |
| KRH58384 | Soybean | nucleus | 33.1 | 29.06 |
| TraesCS3D01G028800.1 | Wheat | nucleus | 22.06 | 28.97 |
| AT1G66660.2 | Thale cress | nucleus | 35.59 | 28.74 |
| KXG32008 | Sorghum | cytosol, nucleus, plastid | 27.05 | 28.57 |
| HORVU3Hr1G004860.1 | Barley | cytosol | 24.56 | 27.38 |
| TraesCS3D01G504900.1 | Wheat | nucleus | 26.69 | 27.37 |
| KXG37942 | Sorghum | cytosol, nucleus, plastid | 24.91 | 26.32 |
| TraesCS3A01G048300.1 | Wheat | nucleus | 25.62 | 26.28 |
| TraesCS3B01G033800.1 | Wheat | nucleus | 25.62 | 26.28 |
| TraesCS3D01G031300.1 | Wheat | nucleus | 25.62 | 26.28 |
| TraesCS3A01G031100.1 | Wheat | cytosol | 24.91 | 26.02 |
| TraesCS3B01G050100.1 | Wheat | cytosol | 25.27 | 25.91 |
| TraesCS3B01G053500.1 | Wheat | cytosol | 25.98 | 25.89 |
| HORVU4Hr1G056260.1 | Barley | nucleus | 25.27 | 25.82 |
| TraesCS3B01G053400.1 | Wheat | cytosol, nucleus, plastid | 26.69 | 25.6 |
| TraesCS3B01G560800.1 | Wheat | nucleus | 25.27 | 25.54 |
| HORVU3Hr1G005320.1 | Barley | nucleus | 23.84 | 25.28 |
| TraesCS3A01G030800.1 | Wheat | cytosol | 24.56 | 25.09 |
| TraesCS3D01G030300.1 | Wheat | nucleus | 26.33 | 24.75 |
| TraesCS3B01G031200.1 | Wheat | nucleus | 25.62 | 24.66 |
| TraesCS3A01G031200.1 | Wheat | cytosol | 23.13 | 24.25 |
| TraesCS3B01G053000.1 | Wheat | cytosol | 24.2 | 24.2 |
| TraesCS3A01G030600.1 | Wheat | nucleus | 24.2 | 24.11 |
| TraesCS3B01G032100.1 | Wheat | cytosol | 24.2 | 23.94 |
| PGSC0003DMT400043047 | Potato | cytosol | 15.66 | 23.91 |
| TraesCS3B01G052800.1 | Wheat | cytosol | 23.84 | 23.76 |
| TraesCS3A01G062700.1 | Wheat | nucleus | 23.13 | 23.64 |
| Solyc03g042550.1.1 | Tomato | nucleus | 30.25 | 23.61 |
| TraesCS3D01G029000.1 | Wheat | cytosol | 23.49 | 23.4 |
| Solyc03g034460.2.1 | Tomato | nucleus | 29.89 | 23.33 |
| KXG32009 | Sorghum | nucleus | 24.56 | 23.31 |
| KXG37941 | Sorghum | cytosol | 23.13 | 23.21 |
| TraesCS3A01G062800.1 | Wheat | nucleus | 23.84 | 23.1 |
| TraesCS3B01G074800.1 | Wheat | cytosol | 22.42 | 22.74 |
| HORVU2Hr1G118560.2 | Barley | nucleus | 22.42 | 22.5 |
| TraesCS3A01G031300.1 | Wheat | cytosol | 22.42 | 22.42 |
| PGSC0003DMT400043050 | Potato | nucleus | 30.25 | 22.31 |
| TraesCS2A01G446400.1 | Wheat | cytosol, nucleus, plastid | 21.35 | 22.3 |
| Solyc03g042520.1.1 | Tomato | nucleus | 24.56 | 22.26 |
| TraesCS4B01G363200.1 | Wheat | nucleus | 25.98 | 22.26 |
| TraesCS1A01G060800.1 | Wheat | nucleus | 24.2 | 22.15 |
| TraesCS3B01G050700.1 | Wheat | nucleus | 24.2 | 22.15 |
| TraesCS3B01G052700.1 | Wheat | nucleus | 19.93 | 22.13 |
| TraesCS4D01G356400.2 | Wheat | nucleus | 26.33 | 22.02 |
| EES00387 | Sorghum | nucleus | 24.91 | 21.94 |
| TraesCS3B01G033700.1 | Wheat | nucleus | 22.78 | 21.92 |
| TraesCS5A01G228300.1 | Wheat | cytosol | 24.56 | 21.9 |
| HORVU3Hr1G004950.1 | Barley | nucleus | 23.13 | 21.67 |
| TraesCS3B01G050900.1 | Wheat | cytosol | 22.42 | 21.58 |
| TraesCS5A01G531400.2 | Wheat | nucleus | 25.27 | 21.45 |
| Solyc03g034450.2.1 | Tomato | nucleus | 29.89 | 21.43 |
| HORVU3Hr1G004890.1 | Barley | nucleus | 22.78 | 21.33 |
| AT3G58040.3 | Thale cress | cytosol | 23.13 | 21.1 |
| Zm00001d041049_P001 | Maize | nucleus | 24.56 | 21.1 |
| AT2G41980.1 | Thale cress | nucleus | 22.78 | 20.98 |
| OQU78944 | Sorghum | nucleus | 24.2 | 20.86 |
| EES17728 | Sorghum | cytosol, mitochondrion, nucleus | 23.84 | 20.49 |
| KXG32014 | Sorghum | nucleus | 16.01 | 20.45 |
| OQU77422 | Sorghum | cytosol | 20.64 | 20.28 |
| AT3G61790.1 | Thale cress | nucleus | 23.49 | 20.25 |
| TraesCS3B01G050200.1 | Wheat | nucleus | 17.79 | 20.24 |
| AT4G27880.1 | Thale cress | nucleus | 23.49 | 20.18 |
| TraesCS3B01G032300.1 | Wheat | cytosol | 14.23 | 20.0 |
| HORVU3Hr1G004880.2 | Barley | nucleus | 23.84 | 19.76 |
| AT5G53360.1 | Thale cress | plasma membrane | 16.37 | 19.74 |
| EES17731 | Sorghum | nucleus | 24.2 | 19.65 |
| HORVU0Hr1G006120.2 | Barley | cytosol, nucleus, plastid | 19.22 | 19.29 |
| TraesCS3B01G054400.1 | Wheat | cytosol | 20.28 | 19.19 |
| TraesCS1D01G061700.1 | Wheat | nucleus | 23.84 | 19.03 |
| HORVU4Hr1G087120.3 | Barley | nucleus | 24.2 | 18.99 |
| HORVU1Hr1G012490.3 | Barley | nucleus | 22.42 | 18.98 |
| TraesCS3A01G030100.1 | Wheat | nucleus | 19.93 | 18.86 |
| TraesCS3D01G015600.1 | Wheat | cytosol | 19.93 | 18.86 |
| TraesCS3D01G029600.1 | Wheat | nucleus | 22.42 | 18.81 |
| TraesCSU01G045900.1 | Wheat | cytosol | 19.93 | 18.73 |
| TraesCSU01G021700.1 | Wheat | nucleus | 24.2 | 18.63 |
| TraesCS3B01G028900.1 | Wheat | cytosol | 19.93 | 18.6 |
| TraesCS2A01G586400.1 | Wheat | nucleus | 23.84 | 18.36 |
| TraesCS2D01G600200.1 | Wheat | nucleus | 23.84 | 18.36 |
| TraesCS2B01G594500.1 | Wheat | nucleus, plastid | 24.2 | 18.13 |
| TraesCS2D01G564800.1 | Wheat | nucleus, plastid | 24.2 | 18.13 |
| TraesCS2A01G589200.1 | Wheat | nucleus, plastid | 23.84 | 17.96 |
| TraesCS3A01G032200.1 | Wheat | nucleus | 21.71 | 17.94 |
| OQU77414 | Sorghum | mitochondrion, nucleus | 22.42 | 17.8 |
| HORVU2Hr1G118840.1 | Barley | plastid | 23.49 | 17.79 |
| TraesCS3B01G052400.1 | Wheat | nucleus | 21.35 | 17.65 |
| OQU77425 | Sorghum | nucleus | 23.49 | 17.55 |
| TraesCS3D01G029300.1 | Wheat | nucleus | 21.0 | 17.35 |
| KXG21322 | Sorghum | nucleus | 22.78 | 17.11 |
| TraesCSU01G231400.1 | Wheat | nucleus | 20.28 | 16.47 |
| OQU86453 | Sorghum | cytosol | 12.46 | 16.36 |
| HORVU3Hr1G005270.1 | Barley | nucleus | 19.57 | 16.13 |
| TraesCS1D01G102900.1 | Wheat | nucleus | 21.35 | 15.71 |
| HORVU0Hr1G006130.1 | Barley | nucleus | 17.79 | 15.15 |
| EES17735 | Sorghum | mitochondrion | 23.84 | 14.92 |
| TraesCS3B01G031100.1 | Wheat | nucleus | 21.0 | 14.57 |
| TraesCS3A01G032100.1 | Wheat | nucleus | 23.49 | 14.47 |
| TraesCS3D01G029400.1 | Wheat | nucleus | 23.13 | 14.16 |
| TraesCS3D01G029700.1 | Wheat | cytosol, mitochondrion, nucleus | 13.88 | 13.68 |
| TraesCS1A01G070000.1 | Wheat | plastid | 11.74 | 13.58 |
| TraesCS3B01G052300.1 | Wheat | nucleus | 21.71 | 13.15 |
| EES02574 | Sorghum | nucleus | 20.64 | 12.95 |
| AT3G13672.2 | Thale cress | nucleus | 10.32 | 11.93 |
| Os05t0152700-00 | Rice | cytosol, extracellular | 0.71 | 2.02 |
Protein Annotations
| MapMan:19.2.2.1.5.3.5 | Gene3D:3.30.40.10 | InterPro:7-in-absentia-prot_TRAF-dom | EntrezGene:833765 | UniProt:A0A178UH98 | ProteinID:AED94243.1 |
| ArrayExpress:AT5G37870 | EnsemblPlantsGene:AT5G37870 | RefSeq:AT5G37870 | TAIR:AT5G37870 | RefSeq:AT5G37870-TAIR-G | EnsemblPlants:AT5G37870.1 |
| TAIR:AT5G37870.1 | Unigene:At.55198 | ProteinID:BAB09033.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0046872 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | RefSeq:NP_198603.1 | ProteinID:OAO92021.1 |
| PFAM:PF03145 | PFscan:PS50089 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF43 | UniProt:Q9FKD9 |
| InterPro:SINA-like | SUPFAM:SSF49599 | SUPFAM:SSF57850 | InterPro:TRAF-like | UniParc:UPI00000A16CA | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
Coordinates
chr5:-:15073764..15074851
Molecular Weight (calculated)
31314.3 Da
IEP (calculated)
8.079
GRAVY (calculated)
-0.017
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.