Factsheet for AT3G13672.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82523	Canola	cytosol	69.55	78.97
CDX75727	Canola	cytosol	69.55	78.97
Bra001519.1-P	Field mustard	nucleus	68.72	78.04
AT5G53360.1	Thale cress	plasma membrane	40.33	42.06
VIT_06s0004g01130.t01	Wine grape	cytosol	51.03	40.26
Solyc01g006190.2.1	Tomato	cytosol	50.21	39.61
PGSC0003DMT400081996	Potato	cytosol	50.21	39.61
PGSC0003DMT400010948	Potato	cytosol	48.97	38.39
AT3G58040.3	Thale cress	cytosol	48.56	38.31
AT2G41980.1	Thale cress	nucleus	47.74	38.03
AT4G27880.1	Thale cress	nucleus	47.33	35.17
AT3G61790.1	Thale cress	nucleus	46.91	34.97
AT5G37910.1	Thale cress	nucleus	13.17	11.59
AT5G37890.1	Thale cress	nucleus	12.76	10.84
AT5G37900.1	Thale cress	nucleus	10.7	10.79
AT5G37870.1	Thale cress	nucleus	11.93	10.32
AT1G66630.1	Thale cress	cytosol	12.76	10.23
AT1G66650.1	Thale cress	nucleus	11.93	8.81
AT1G66610.1	Thale cress	nucleus	13.17	8.74
AT5G62800.1	Thale cress	nucleus	12.35	8.62
AT5G37930.1	Thale cress	nucleus	11.93	8.31
AT1G66620.1	Thale cress	nucleus	10.29	7.99
AT1G66660.2	Thale cress	nucleus	9.88	6.9

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:820573	ProteinID:AEE75392.2	ArrayExpress:AT3G13672
EnsemblPlantsGene:AT3G13672	RefSeq:AT3G13672	TAIR:AT3G13672	RefSeq:AT3G13672-TAIR-G	EnsemblPlants:AT3G13672.2	TAIR:AT3G13672.2
Unigene:At.48655	UniProt:F4JDF6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	RefSeq:NP_001319542.1
PFAM:PF03145	PO:PO:0000037	PO:PO:0000293	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0009005	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009046	PO:PO:0009047	PO:PO:0020030	PO:PO:0020100	PO:PO:0025281	PANTHER:PTHR10315
PANTHER:PTHR10315:SF42	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000848893E	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4JDF6]

Coordinates

chr3:-:4473541..4474364

Molecular Weight (calculated)

28322.9 Da

IEP (calculated)

7.193

GRAVY (calculated)

-0.479

Length

243 amino acids

Sequence
(BLAST)

001: MEPRINDLQV ESRVHELLDF PVHTNQISSA IYECPNDHIE NPKKKPYNCP HSGAKCDVTG DIQRLLLHLR NDHNVEMSDG RSFSHRYVHH DPKHLHHATW
101: MLTVSYITDY LALFLQLCEF LSFNPLETMQ LLDCCGRKFC LYFEAFHLRK TPMYMAFMQF MGDEEEAMSF SYSLQVGGNG RKLTWQGVPR SIRDSHKTVR
201: DSQDGLIITR KLALFFSTDN NTTDKELKLK VSGRVWREQP VSI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.