Factsheet for PGSC0003DMT400010948

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081996	Potato	cytosol	89.68	90.26
VIT_06s0004g01130.t01	Wine grape	cytosol	72.58	73.05
PGSC0003DMT400060943	Potato	cytosol	55.81	70.61
PGSC0003DMT400060947	Potato	cytosol	55.81	70.61
PGSC0003DMT400054414	Potato	cytosol	67.1	68.2
PGSC0003DMT400023575	Potato	cytosol	65.16	64.33
PGSC0003DMT400050427	Potato	cytosol	65.16	64.13
PGSC0003DMT400048586	Potato	mitochondrion	66.13	63.86
PGSC0003DMT400000649	Potato	cytosol	65.48	60.42
PGSC0003DMT400018049	Potato	nucleus	64.84	60.36
CDX75727	Canola	cytosol	38.71	56.07
Bra001519.1-P	Field mustard	nucleus	38.06	55.14
CDX82523	Canola	cytosol	38.06	55.14
AT3G13672.2	Thale cress	nucleus	38.39	48.97
PGSC0003DMT400043047	Potato	cytosol	12.58	21.2
PGSC0003DMT400043050	Potato	nucleus	21.61	17.59

Protein Annotations

MapMan:19.2.2.1.5.3.5	Gene3D:2.60.210.10	Gene3D:3.30.40.10	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	UniProt:M0ZYU2	PFAM:PF03145	EnsemblPlantsGene:PGSC0003DMG400004288	PGSC:PGSC0003DMG400004288
EnsemblPlants:PGSC0003DMT400010948	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF29	InterPro:SINA-like
SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	UniParc:UPI00029487EE	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

Ubiquitin ligase SINAT2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004288]

Coordinates

chr12:+:61004241..61009053

Molecular Weight (calculated)

34904.8 Da

IEP (calculated)

7.919

GRAVY (calculated)

-0.330

Length

310 amino acids

Sequence
(BLAST)

001: MASGGSSYQD IGDSHNAYAD YGIAPKTAES KSSPFRKSTA VNIIGGNHGT RSNTAVHELL ECPVCMNLMY PPIHQCPNGH TLCLKCKSKV HVCPICRHEL
101: GNIRCLALEK IAESLELPCR YQVFGCQDIF TYHSRLQHEQ NCKFRPYNCP YAGSECTVTG DIQSLVAHLK DDHKVDMHDG CTFNHRYVKS NPQDVENATW
201: MLTVFNCFGH QFCLHFEAFN VGVAPVYMAF LRFMGDDDDA KKFSYSLEVG GFGRKLIWQG VPRSIRDSHK TVRDSLDGLL IQRSMALFFS GGDRKELKLK
301: VAGRIWREPL

Best Arabidopsis Sequence Match ( AT3G58040.1 )
(BLAST)

001: MAPGGSALKE VMESNSTGMD YEVKTAKVEV NNNKPTKPGS AGIGKYGIHS NNGVYELLEC PVCTNLMYPP IHQCPNGHTL CSNCKLRVQN TCPTCRYELG
101: NIRCLALEKV AESLEVPCRY QNLGCHDIFP YYSKLKHEQH CRFRPYTCPY AGSECSVTGD IPTLVVHLKD DHKVDMHDGC TFNHRYVKSN PHEVENATWM
201: LTVFNCFGRQ FCLHFEAFQL GMAPVYMAFL RFMGDENEAK KFSYSLEVGA HGRKLTWQGI PRSIRDSHRK VRDSQDGLII PRNLALYFSG GDRQELKLRV
301: TGRIWKEE

Arabidopsis Description

SINAT2E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A178VHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.