Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75727 | Canola | cytosol | 97.66 | 97.66 |
| Bra001519.1-P | Field mustard | nucleus | 96.26 | 96.26 |
| AT3G13672.2 | Thale cress | nucleus | 78.97 | 69.55 |
| CDY64066 | Canola | cytosol | 28.04 | 55.56 |
| CDY67899 | Canola | cytosol, plastid | 32.71 | 42.17 |
| CDY56244 | Canola | cytosol | 54.21 | 40.14 |
| CDY06056 | Canola | cytosol | 48.13 | 39.31 |
| CDY38819 | Canola | nucleus | 35.51 | 39.18 |
| CDY06889 | Canola | cytosol | 54.21 | 39.06 |
| Solyc01g006190.2.1 | Tomato | cytosol | 56.07 | 38.96 |
| PGSC0003DMT400081996 | Potato | cytosol | 56.07 | 38.96 |
| VIT_06s0004g01130.t01 | Wine grape | cytosol | 55.61 | 38.64 |
| CDY35390 | Canola | nucleus | 54.67 | 38.11 |
| PGSC0003DMT400010948 | Potato | cytosol | 55.14 | 38.06 |
| CDY14808 | Canola | cytosol | 53.27 | 37.75 |
| CDY57244 | Canola | cytosol | 54.21 | 37.66 |
| CDY22549 | Canola | nucleus | 54.21 | 37.54 |
| CDY67927 | Canola | cytosol | 54.21 | 37.3 |
| CDX88968 | Canola | cytosol | 54.21 | 37.3 |
| CDX71977 | Canola | cytosol | 53.74 | 37.1 |
| CDX92848 | Canola | nucleus | 50.47 | 35.41 |
| CDX97399 | Canola | nucleus | 52.8 | 35.2 |
| CDY19018 | Canola | nucleus | 52.34 | 34.78 |
| CDY14268 | Canola | nucleus | 51.87 | 34.69 |
| CDX89221 | Canola | nucleus | 51.87 | 34.47 |
| CDX67865 | Canola | nucleus | 51.87 | 34.37 |
| CDY25077 | Canola | nucleus | 51.87 | 34.37 |
| CDX89132 | Canola | cytosol | 51.4 | 33.74 |
| CDY43950 | Canola | nucleus | 50.47 | 33.23 |
| CDY67900 | Canola | cytosol, endoplasmic reticulum, plastid | 34.58 | 26.81 |
| CDY14650 | Canola | cytosol, nucleus, plastid | 26.64 | 25.79 |
| CDY01757 | Canola | cytosol | 3.74 | 15.09 |
| CDY10787 | Canola | plastid | 17.76 | 13.15 |
| CDY11709 | Canola | nucleus | 9.81 | 12.73 |
| CDY01699 | Canola | nucleus, plastid | 16.36 | 12.41 |
| CDX99687 | Canola | nucleus | 16.36 | 12.37 |
| CDY52473 | Canola | nucleus | 16.36 | 12.32 |
| CDY27008 | Canola | nucleus | 15.89 | 10.33 |
| CDY12498 | Canola | nucleus | 13.08 | 10.29 |
| CDY47873 | Canola | nucleus | 15.42 | 10.19 |
| CDY01756 | Canola | cytosol, nucleus, plastid | 14.02 | 10.1 |
| CDY25763 | Canola | nucleus | 12.62 | 9.93 |
| CDX95911 | Canola | cytosol, nucleus, plastid | 13.55 | 9.86 |
| CDY01695 | Canola | nucleus | 14.02 | 9.71 |
| CDX96138 | Canola | nucleus | 14.49 | 9.12 |
| CDY36211 | Canola | nucleus | 14.95 | 8.86 |
| CDY36209 | Canola | plastid | 8.41 | 8.53 |
| CDX83363 | Canola | cytosol, nucleus, plasma membrane | 7.01 | 8.38 |
| CDX96140 | Canola | cytosol, nucleus, plastid | 13.55 | 8.31 |
| CDY67278 | Canola | cytosol | 2.8 | 7.41 |
| CDY70665 | Canola | nucleus | 10.28 | 6.79 |
| CDY01758 | Canola | cytosol | 7.01 | 3.43 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.5 | Gene3D:2.60.210.10 | InterPro:7-in-absentia-prot_TRAF-dom |
| GO:A0A078D5L6 | EnsemblPlants:CDX82523 | ProteinID:CDX82523 | ProteinID:CDX82523.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00137673001 | InterPro:IPR008974 | PFAM:PF03145 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF73 | InterPro:SINA-like |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniPathway:UPA00143 | UniParc:UPI0004EE626C | : | : |
Description
BnaA03g32980D
Coordinates
chrLK031828:+:1702189..1703116
Molecular Weight (calculated)
25246.8 Da
IEP (calculated)
7.677
GRAVY (calculated)
-0.775
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRINHLQI ESQVHELLDY PVCTNQITST IYQCSNDYTG EVNNDKEKPY NCPYSGSKCT ATGDRQWLLQ HLRNDHHVEM HDGRSFSHRY VHHNPKHLHH
101: ATWMLTLLDC YGRQFCLYFE AFHLKKTPMY IAYMQFMGDE EEATSFSYTL EISGNSRKMT WQGVPRSIRD SHKTVRDSQD GLIITRKLAM FFSADNTNNK
201: ELKLKISGRV WREH
101: ATWMLTLLDC YGRQFCLYFE AFHLKKTPMY IAYMQFMGDE EEATSFSYTL EISGNSRKMT WQGVPRSIRD SHKTVRDSQD GLIITRKLAM FFSADNTNNK
201: ELKLKISGRV WREH
001: MEPRINDLQV ESRVHELLDF PVHTNQISSA IYECPNDHIE NPKKKPYNCP HSGAKCDVTG DIQRLLLHLR NDHNVEMSDG RSFSHRYVHH DPKHLHHATW
101: MLTLLDCCGR KFCLYFEAFH LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI ITRKLALFFS TDNNTTDKEL
201: KLKVSGRVWR EQPVSI
101: MLTLLDCCGR KFCLYFEAFH LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI ITRKLALFFS TDNNTTDKEL
201: KLKVSGRVWR EQPVSI
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4JDF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.